Bio-MUST-Apps-OmpaPa

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META.yml  view on Meta::CPAN

  Bio::MUST::Drivers::Blast::Database: '0'
  Carp: '0'
  Const::Fast: '0'
  File::Basename: '0'
  File::Find::Rule: '0'
  File::Temp: '0'
  FileHandle: '0'
  Getopt::Euclid: '0'
  IO::Prompter: '0'
  List::AllUtils: '0'
  Modern::Perl: '0'
  Moose: '0'
  Moose::Role: '0'
  Moose::Util::TypeConstraints: '0'
  MooseX::SemiAffordanceAccessor: '0'
  MooseX::Storage: '0'
  POSIX: '0'
  Path::Class: '0'
  Scalar::Util: '0'
  Smart::Comments: '0'
  Sort::Naturally: '0'

Makefile.PL  view on Meta::CPAN

    "Bio::MUST::Drivers::Blast::Database" => 0,
    "Carp" => 0,
    "Const::Fast" => 0,
    "File::Basename" => 0,
    "File::Find::Rule" => 0,
    "File::Temp" => 0,
    "FileHandle" => 0,
    "Getopt::Euclid" => 0,
    "IO::Prompter" => 0,
    "List::AllUtils" => 0,
    "Modern::Perl" => 0,
    "Moose" => 0,
    "Moose::Role" => 0,
    "Moose::Util::TypeConstraints" => 0,
    "MooseX::SemiAffordanceAccessor" => 0,
    "MooseX::Storage" => 0,
    "POSIX" => 0,
    "Path::Class" => 0,
    "Scalar::Util" => 0,
    "Smart::Comments" => 0,
    "Sort::Naturally" => 0,

Makefile.PL  view on Meta::CPAN

  "Bio::MUST::Drivers::Blast::Database" => 0,
  "Carp" => 0,
  "Const::Fast" => 0,
  "File::Basename" => 0,
  "File::Find::Rule" => 0,
  "File::Temp" => 0,
  "FileHandle" => 0,
  "Getopt::Euclid" => 0,
  "IO::Prompter" => 0,
  "List::AllUtils" => 0,
  "Modern::Perl" => 0,
  "Moose" => 0,
  "Moose::Role" => 0,
  "Moose::Util::TypeConstraints" => 0,
  "MooseX::SemiAffordanceAccessor" => 0,
  "MooseX::Storage" => 0,
  "POSIX" => 0,
  "Path::Class" => 0,
  "Scalar::Util" => 0,
  "Smart::Comments" => 0,
  "Sort::Naturally" => 0,

bin/ompa-pa.pl  view on Meta::CPAN

#!/usr/bin/env perl
# PODNAME: ompa-pa.pl
# ABSTRACT: Extract seqs from BLAST/HMMER interactively or in batch mode
# CONTRIBUTOR: Amandine BERTRAND <amandine.bertrand@doct.uliege.be>

use Modern::Perl '2011';
use autodie;

use Getopt::Euclid qw(:vars);
use Smart::Comments;

use IO::Prompter [
    -verbatim,
    -style => 'blue strong',
    -must  => { 'be a string' => qr{\S+}xms }
];