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test/taxdump/gc.prt  view on Meta::CPAN

--     Added CTG,TTG as allowed alternate start codons in Standard code.
--        Prats et al. 1989, Hann et al. 1992
--
--  Version 3.3 - 10/13/95
--     Added alternate intiation codon ATC to code 5
--        based on complete mitochondrial genome of honeybee
--        Crozier and Crozier (1993)
--
--  Version 3.2 - 6/24/95
--  Code       Comments
--   10        Alternative Ciliate Macronuclear renamed to Euplotid Macro...
--   15        Bleharisma Macro.. code added
--    5        Invertebrate Mito.. GTG allowed as alternate initiator
--   11        Eubacterial renamed to Bacterial as most alternate starts
--               have been found in Achea
--
--
--  Version 3.1 - 1995
--  Updated as per Andrzej Elzanowski at NCBI
--     Complete documentation in NCBI toolkit documentation
--  Note: 2 genetic codes have been deleted
--

test/taxdump/gc.prt  view on Meta::CPAN

 {
  name "Alternative Flatworm Mitochondrial" ,
  id 14 ,
  ncbieaa  "FFLLSSSSYYY*CCWWLLLLPPPPHHQQRRRRIIIMTTTTNNNKSSSSVVVVAAAADDEEGGGG",
  sncbieaa "-----------------------------------M----------------------------"
  -- Base1  TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG
  -- Base2  TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG
  -- Base3  TCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAG
 } ,
 {
  name "Blepharisma Macronuclear" ,
  id 15 ,
  ncbieaa  "FFLLSSSSYY*QCC*WLLLLPPPPHHQQRRRRIIIMTTTTNNKKSSRRVVVVAAAADDEEGGGG",
  sncbieaa "-----------------------------------M----------------------------"
  -- Base1  TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG
  -- Base2  TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG
  -- Base3  TCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAG
 } ,
 {
  name "Chlorophycean Mitochondrial" ,
  id 16 ,