Macro results from the CPAN

Macro

Bio-MUST-Core

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lib/Bio/MUST/Core/GeneticCode/Factory.pm view on Meta::CPAN

--     Added CTG,TTG as allowed alternate start codons in Standard code.
--        Prats et al. 1989, Hann et al. 1992
--
--  Version 3.3 - 10/13/95
--     Added alternate intiation codon ATC to code 5
--        based on complete mitochondrial genome of honeybee
--        Crozier and Crozier (1993)
--
--  Version 3.2 - 6/24/95
--  Code       Comments
--   10        Alternative Ciliate Macronuclear renamed to Euplotid Macro...
--   15        Blepharisma Macro.. code added
--    5        Invertebrate Mito.. GTG allowed as alternate initiator
--   11        Eubacterial renamed to Bacterial as most alternate starts
--               have been found in Archea
--
--
--  Version 3.1 - 1995
--  Updated as per Andrzej Elzanowski at NCBI
--     Complete documentation in NCBI toolkit documentation
--  Note: 2 genetic codes have been deleted
--

lib/Bio/MUST/Core/GeneticCode/Factory.pm view on Meta::CPAN

 {
  name "Alternative Flatworm Mitochondrial" ,
  id 14 ,
  ncbieaa  "FFLLSSSSYYY*CCWWLLLLPPPPHHQQRRRRIIIMTTTTNNNKSSSSVVVVAAAADDEEGGGG",
  sncbieaa "-----------*-----------------------M----------------------------"
  -- Base1  TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG
  -- Base2  TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG
  -- Base3  TCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAG
 } ,
 {
  name "Blepharisma Macronuclear" ,
  id 15 ,
  ncbieaa  "FFLLSSSSYY*QCC*WLLLLPPPPHHQQRRRRIIIMTTTTNNKKSSRRVVVVAAAADDEEGGGG",
  sncbieaa "----------*---*--------------------M----------------------------"
  -- Base1  TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG
  -- Base2  TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG
  -- Base3  TCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAG
 } ,
 {
  name "Chlorophycean Mitochondrial" ,
  id 16 ,

t/genetic_code.t view on Meta::CPAN

    'SGC5',
    'Echinoderm Mitochondrial',
    'Flatworm Mitochondrial',
    'SGC8',
    'Euplotid Nuclear',
    'SGC9',
    'Bacterial, Archaeal and Plant Plastid',
    'Alternative Yeast Nuclear',
    'Ascidian Mitochondrial',
    'Alternative Flatworm Mitochondrial',
    'Blepharisma Macronuclear',
    'Chlorophycean Mitochondrial',
    'Trematode Mitochondrial',
    'Scenedesmus obliquus Mitochondrial',
    'Thraustochytrium Mitochondrial',
    'Rhabdopleuridae Mitochondrial',
    'Candidate Division SR1 and Gracilibacteria',
    'Pachysolen tannophilus Nuclear',
    'Blastocrithidia Nuclear',
    'Condylostoma Nuclear',
    'Karyorelict Nuclear',

t/genetic_code.t view on Meta::CPAN

MRWLYSTSHKDIGLLYLVFAFFGGLLGTSLSMLIRYELALPGRGLLDGNGQLYNVIITGHGIIMLLFMVM
PALFGGFGNWLLPIMIGAPDMAFPRLNNISFWLNPPALALLLLSTLVEQGPGTGWTAYPPLSVQHSGTSV
DLAILSLHLNGLSSILGAVNMLVTVAGLRAPGMKLLHMPLFVWAIALTAVLVILAVPVLAAALVMLLTDR
NINTAYFCESGDLILYQHLFWFFGHPEVYILILPAFGIVSQVVSFFSQKPVFGLTGMICAMGAISLLGFI
VWAHHMFTVGLDLDTVAYFTSATMIIAVPTGMKIFSWMATIYSGRVWFTTPMWFAVGFICLFTLGGVTGV
VLANAGVDMLVHDTYYVVAHFHYVLSMGAVFGIFAGVYFWGNLITGLGYHEGRAMVHFWLLFIGVNLTFF
PQHFLGLAGMPRRMFDYADCFAGWNAVSSFGASISFISVIVFATTFQEAVRTVPRTATTLEWVLLATPAH
HALSQVPVLRTASSHx
PEP
    ],
    [ 'Blepharisma Macronuclear', '15', '-3', <<'CDS',
ttaaccaccgaatccatagagggtctttccttgtctcttgagagcgtagactacatcaagagcggtgaca
gtctttctcttggcgtgctcggtgtaggtgactgagtctctgatgactgactcaaggaatcccttgagga
cagctctggtctcttcatagacgagggatgaaattctcttgacaccacctcttctagctaatcttctgat
agctggcttggtgactcccaagatagtctctctgagggccttcttggcgtgtctcttggctccgaccttt
ccgtaaccttttcctccttttcctccttttcctcttcctggcatat
CDS
    <<'PEP'
MPGRGKGGKGGKGYGKVGAKRHAKKALRETILGVTKPAIRRLARRGGVKRISSLVYEETRAVLKGFLESV
IRDSVTYTEHAKRKTVTALDVVYALKRQGKTLYGFGGx
PEP

test/G12210-O-S-1-NO.data view on Meta::CPAN

0.083400	0.208390	'Ambystoma_::Anolis_car::Canis_fami::Chelonoidi::Danio_reri::Emys_orbic::Gallus_gal::Homo_sapie::Leucoraja_::Loxodonta_::Macropus_e::Meleagris_::Monodelphi::Mus_muscul::Notophthal::Oreochromi::Ornithorhy::Pelodiscus::Protopteru::Pse...
0.002190	0.017560	'Ambystoma_::Anolis_car::Canis_fami::Chelonoidi::Emys_orbic::Gallus_gal::Homo_sapie::Loxodonta_::Macropus_e::Meleagris_::Monodelphi::Mus_muscul::Notophthal::Ornithorhy::Pelodiscus::Protopteru::Pseudacris::Python_reg::Rana_chens::Tae...
0.006980	0.071250	'Ambystoma_::Anolis_car::Canis_fami::Chelonoidi::Emys_orbic::Gallus_gal::Homo_sapie::Loxodonta_::Macropus_e::Meleagris_::Monodelphi::Mus_muscul::Notophthal::Ornithorhy::Pelodiscus::Pseudacris::Python_reg::Rana_chens::Taeniopygi::Xen...
0.008700	0.056470	'Anolis_car::Canis_fami::Chelonoidi::Emys_orbic::Gallus_gal::Homo_sapie::Loxodonta_::Macropus_e::Meleagris_::Monodelphi::Mus_muscul::Ornithorhy::Pelodiscus::Python_reg::Taeniopygi'
0.020470	0.033650	'Anolis_car::Chelonoidi::Emys_orbic::Gallus_gal::Meleagris_::Pelodiscus::Python_reg::Taeniopygi'
0.002460	0.014320	'Chelonoidi::Emys_orbic::Gallus_gal::Meleagris_::Pelodiscus::Taeniopygi'
0.035770	0.044620	'Chelonoidi::Emys_orbic::Pelodiscus'
0.000010	0.017400	'Chelonoidi::Emys_orbic'
0.013210	0.023040	'Emys_orbic'
0.014950	0.022240	'Chelonoidi'
0.044150	0.053490	'Pelodiscus'
0.012790	0.081090	'Gallus_gal::Meleagris_::Taeniopygi'
0.006880	0.037590	'Gallus_gal::Meleagris_'
0.017320	0.016820	'Meleagris_'
0.033180	0.009100	'Gallus_gal'
0.015650	0.057550	'Taeniopygi'
0.056650	0.099780	'Anolis_car::Python_reg'
0.013120	0.107830	'Python_reg'
0.000010	0.097840	'Anolis_car'
0.054930	0.070840	'Canis_fami::Homo_sapie::Loxodonta_::Macropus_e::Monodelphi::Mus_muscul::Ornithorhy'
0.018500	0.024870	'Canis_fami::Homo_sapie::Loxodonta_::Macropus_e::Monodelphi::Mus_muscul'
0.020920	0.082250	'Canis_fami::Homo_sapie::Loxodonta_::Mus_muscul'
0.000010	0.052210	'Loxodonta_'
0.000010	0.006450	'Canis_fami::Homo_sapie::Mus_muscul'
0.004290	0.042360	'Canis_fami'
0.004280	0.007510	'Homo_sapie::Mus_muscul'
0.002140	0.034750	'Homo_sapie'
0.009140	0.077330	'Mus_muscul'
0.022920	0.055770	'Macropus_e::Monodelphi'
0.033260	0.038350	'Monodelphi'
0.000010	0.051410	'Macropus_e'
0.080930	0.132360	'Ornithorhy'
0.013420	0.043100	'Ambystoma_::Notophthal::Pseudacris::Rana_chens::Xenopus_tr'
0.029560	0.140100	'Pseudacris::Rana_chens::Xenopus_tr'
0.025720	0.145590	'Xenopus_tr'
0.000010	0.053220	'Pseudacris::Rana_chens'
0.040680	0.127910	'Rana_chens'
0.027730	0.133860	'Pseudacris'
0.064130	0.128530	'Ambystoma_::Notophthal'
0.000010	0.080930	'Notophthal'
0.014720	0.089280	'Ambystoma_'

test/G12210-O-S-1-NO.out view on Meta::CPAN

"gene"	"ref"	"resid"	"bip"
0.08093	0.13236	0.0434500448125863	"Ornithorhy"
0.05493	0.07084	0.0334684494560803	"Canis_fami::Homo_sapie::Loxodonta_::Macropus_e::Monodelphi::Mus_muscul::Ornithorhy"
1e-05	0.09784	-0.0284817346364805	"Anolis_car"
0.03318	0.0091	0.0277941370810692	"Gallus_gal"
0.05665	0.09978	0.0276531336176096	"Anolis_car::Python_reg"
0.06413	0.12853	0.0276472894449755	"Ambystoma_::Notophthal"
0.04415	0.05349	0.0272059936785221	"Pelodiscus"
0.0834	0.20839	0.0261235671623125	"Ambystoma_::Anolis_car::Canis_fami::Chelonoidi::Danio_reri::Emys_orbic::Gallus_gal::Homo_sapie::Leucoraja_::Loxodonta_::Macropus_e::Meleagris_::Monodelphi::Mus_muscul::Notophthal::Oreochromi::Ornithorhy::Pelodiscus:...
1e-05	0.08093	-0.0240787563770285	"Notophthal"
0.03577	0.04462	0.0211355393415226	"Chelonoidi::Emys_orbic::Pelodiscus"
0.03326	0.03835	0.0202581043141284	"Monodelphi"
0.04003	0.21695	-0.019475261572218	"Danio_reri::Oreochromi"
0.01312	0.10783	-0.017972902750728	"Python_reg"
1e-05	0.05322	-0.0168637044805523	"Pseudacris::Rana_chens"
1e-05	0.05221	-0.0166007235200528	"Loxodonta_"
1e-05	0.05141	-0.0163924217691621	"Macropus_e"
0.02572	0.14559	-0.0152047453927685	"Xenopus_tr"
0.00698	0.07125	-0.0145883051912512	"Ambystoma_::Anolis_car::Canis_fami::Chelonoidi::Emys_orbic::Gallus_gal::Homo_sapie::Loxodonta_::Macropus_e::Meleagris_::Monodelphi::Mus_muscul::Notophthal::Ornithorhy::Pelodiscus::Pseudacris::Python_reg::Rana_chen...
0.00914	0.07733	-0.0140113984980204	"Mus_muscul"
0.01472	0.08928	-0.0115429059019501	"Ambystoma_"
0.01279	0.08109	-0.0113404167272067	"Gallus_gal::Meleagris_::Taeniopygi"
0.02773	0.13386	-0.0101405209703338	"Pseudacris"
0.02956	0.1401	-0.00993527462728114	"Pseudacris::Rana_chens::Xenopus_tr"
0.00214	0.03475	-0.00992453780686351	"Homo_sapie"
0.01732	0.01682	0.00992402518497407	"Meleagris_"
0.00429	0.04236	-0.00975600821221118	"Canis_fami"
0.0087	0.05647	-0.00901993034354572	"Anolis_car::Canis_fami::Chelonoidi::Emys_orbic::Gallus_gal::Homo_sapie::Loxodonta_::Macropus_e::Meleagris_::Monodelphi::Mus_muscul::Ornithorhy::Pelodiscus::Python_reg::Taeniopygi"
0.0185	0.02487	0.00900798881663651	"Canis_fami::Homo_sapie::Loxodonta_::Macropus_e::Monodelphi::Mus_muscul"
0.02047	0.03365	0.00869187710061119	"Anolis_car::Chelonoidi::Emys_orbic::Gallus_gal::Meleagris_::Pelodiscus::Python_reg::Taeniopygi"
0.04964	0.20965	-0.00796450809534044	"Oreochromi"
1e-05	0.0174	-0.00753699358442168	"Chelonoidi::Emys_orbic"
0.11478	0.40247	0.0069695623962312	"Leucoraja_"
0.01495	0.02224	0.00614278082268964	"Chelonoidi"
0.0054	0.03265	-0.00611774571077544	"Danio_reri::Leucoraja_::Oreochromi"
0.00688	0.03759	-0.00592400902252545	"Gallus_gal::Meleagris_"
0.00219	0.01756	-0.0053986539345998	"Ambystoma_::Anolis_car::Canis_fami::Chelonoidi::Emys_orbic::Gallus_gal::Homo_sapie::Loxodonta_::Macropus_e::Meleagris_::Monodelphi::Mus_muscul::Notophthal::Ornithorhy::Pelodiscus::Protopteru::Pseudacris::Python_re...
0.02292	0.05577	0.00538233368848364	"Macropus_e::Monodelphi"
1e-05	0.00645	-0.00468586336910537	"Canis_fami::Homo_sapie::Mus_muscul"
0.04068	0.12791	0.00435872330191574	"Rana_chens"
0.00246	0.01432	-0.00428503184349253	"Chelonoidi::Emys_orbic::Gallus_gal::Meleagris_::Pelodiscus::Taeniopygi"
0.01321	0.02304	0.00419447907179896	"Emys_orbic"
0.02092	0.08225	-0.00351245426599818	"Canis_fami::Homo_sapie::Loxodonta_::Mus_muscul"
0.07329	0.28063	-0.00279608094311684	"Protopteru"
0.01565	0.05755	-0.00235113770724815	"Taeniopygi"
0.05557	0.2095	-0.00199545151704843	"Danio_reri"
0.01342	0.0431	-0.000818687331785071	"Ambystoma_::Notophthal::Pseudacris::Rana_chens::Xenopus_tr"
0.00428	0.00751	-0.000691863189035539	"Homo_sapie::Mus_muscul"

test/G12210-O-S-1-NO.ref-tre view on Meta::CPAN

(((((((((Emys_orbic:0.023040,Chelonoidi:0.022240):0.017400,Pelodiscus:0.053490):0.044620,((Meleagris_:0.016820,Gallus_gal:0.009100):0.037590,Taeniopygi:0.057550):0.081090):0.014320,(Python_reg:0.107830,Anolis_car:0.097840):0.099780):0.033650,(((Loxod...

test/G12210-O-S-1-NO.tre view on Meta::CPAN

(((((((((Emys_orbic:0.013210,Chelonoidi:0.014950):0.000010,Pelodiscus:0.044150):0.035770,((Meleagris_:0.017320,Gallus_gal:0.033180):0.006880,Taeniopygi:0.015650):0.012790):0.002460,(Python_reg:0.013120,Anolis_car:0.000010):0.056650):0.020470,(((Loxod...

test/GNTPAN19590.ali view on Meta::CPAN

>Canis familiaris@ENSCAFP00000022865
*********************************************************************************************************************************************************TVTNAFILSLSLSDLLTALLCLPAAFLDLFTPP****PG****GSVGPWRGFCAASRFFSSCFGIVSTLSVALVSLDRYCAIVRPPREKLGRRRALQ...
>Homo sapiens@ENSP00000378548
M*EEPQPP*RPPASMALLGSQHSGAPSAAGPPGGTSSAAT**AAVLSFST*VATAALGNLSDASGGGTAAAPG**********GGGLGGSGAAREAGAAVRRP***LGPEAAPLLSHGAAVAAQALVLLLIFLLSSLGNCAVMGVIVKHRQLRTVTNAFILSLSLSDLLTALLCLPAAFLDLFTPPGGSAPA****AAAGPWRGFCAASRFFSSCFGIVSTLSVALISLDRYCAIVRPPREKIGRRRALQ...
>Loxodonta africana@ENSLAFP00000027579
**TDSRPPRGPMVTTSLLGSPQPDAPSAAGAPGGTSR*SF**STLATAAT*AAAAALGNQSDGSGGGTAAAP****************************RPP***LGPEAVQLLSHGAVVAAQALVLLLIFLLSSLGNCAVMGVIVKHRQLRTVTNSFILSLSLSDLLTALLCLPAAFLDLFTPPGGSAPAAATAASMGPWRGFCAASRFFSSCFGIVSTFSVALISLDRYCAIVRPPREKIGRRRALQ...
>Latimeria chalumnae@ENSLACP00000003015
***************************************************************************************************************************************************************************************************************ANGFFNSCFGIISTL**TLISFDRYYAVVRQPQEKIGKKQAIQ...
>Monodelphis domestica@ENSMODP00000032414
****************************SGASAGVGRGASFHAAVISFTTVAAVAAEARASRGGGGG*SGLAG**********AEKAGTGSTIHSNSSI***PVPAGAGAKRLLLEPWVAVAVQALVLLLIFLLSSLGNCAVMGVIVKHRQLRTVTNAFILSLSLSDLLTALLCLPAAFLALFTRPGGGSNG***PPIARPWQRFCTASRFFGSCFGIVSILTMTLISLDRYYAIVRHPGEKIGWHRALQ...
>Macropus eugenii@ENSMEUP00000010418
MEEEPPPP*PPRPPMSTRGSLRPEAALASGSSSGAARAAT**TAVISFTTAAAVAAEARASRGGGGGTAAAAG**********WGRVGSEATPAAAAAAQQQPVPEATGAKRLLLEPWAAVAAQALVLLFIFLLSSLGNCAVMGVIAKHRQLRTVTNAFILSLSLSDLLTALLCLPAAFLALFTPHAPAA*******AARPWQRFCTASRFFGSCFGIVSTLTMTLISLDRYNAIVRHPGGKLGWRRALL...
>Mus musculus@ENSMUSP00000058762
MEEQARPPGRPAASATLQGSAH*********PGGAASTAT**AAALSFSS*VATVTLGNQSD*AGRPEAAGS****************************RGP********APLLWHGAAVAAQALVLLLIFLLSSLGNCAVMGVIVKHRQLRTVTNAFILSLSLSDLLTALLCLPAAFLDLFAPPGDS**********GPWRSFCAASRFFSSCFGIVSTFSVALISLDRYCAIVRPPRDKLGRRRALQ...
>Oreochromis niloticus@ENSONIP00000025824
***************************************************MVTNLMATTTE*****TIVQTPGNLSDHKDQRGSEF********GHTHQELNPSVLSADESNSVLQGIIVAAQALILLSVFLLSSLGNSAVVIIIIKHRQLRTVTNAFIMSLSLSDFLTAVLCLPFSFVMLFTKDGVWMFG**********DRFCVANGCLNTCFGIISTLTMTLISFDRYYSIVRQPQAKIGRQKAAQ...
>Protopterus annectens@comp102315_c0_seq1
*******************************************MDSLADTVFLVNVTAITSSGGGVGLGTLTP**********PFNTTIIAIENQTVEAQTQGPSGGKILEASVLLHGIAVASQVLMLLVIFLLSSLGNCAVIIVIIKHRQLRTITNAFIMSLSLSDFMTAILCLPFSFIMLFSRDGAWIFG**********DHFCVANGFFNSCFGIISTLTMTLISFDRYYAIVRQPQEKIGRKRAIQ...
>Xenopus tropicalis@ENSXETP00000037092
***************HRGLTHRPHRDTDRQPEGCLPPASPRHMEPRLLQLALLTNMTALGSPGAG*GTAAASPGG*****GRHGNELTATSSPSPGGNRSTPEPGPAQEAEGSPLLHGVSVACQALLLLAIFLLSCLGNCAVILVIAKHRQLRTVTNAFILSLSVSDLLAALLCLPFSFLLLL*RGGAWPFG**********DRLCLASGFLNCCFGIVSSLTMTLISMDRYYAIVRQPQGKIGRARALQ...

test/GNTPAN19593.ali view on Meta::CPAN

>Danio rerio@ENSDARP00000065847
******MWKRHPSEDFSVDNIRYFSRHKGEVNCCAFSPDCQLLLTCCDAGKLYLWKTSTAKLLASVSGHTGPVKCCVFSSDGRLFASASHDCSVRIWCSSSL*KCTHTLTAHRRSVETVSFSPDGQWLLSGGWDNRALIWSIQSGAL**LEELKGHNAAVQSSVFSSDSQSVATGSWDRAVRVWKLRDRQ**AEAMVLQGHLGNVACLCFSVAGML**********************************...
>Homo sapiens@ENSP00000362677
******MNSGVPATL*AVRRVKFFGQHGGEVNSSAFSPDGQMLLTGSEDGCVYGWETRSGQLLWRLGGHTGPVKFCRFSPDGHLFASASCDCTVRLWDVARA*KCLRVLKGHQRSVETVSFSPDSRQLASGGWDKRVMLWDVQSGQM**LRLLVGHRDSIQSSDFSPTVNCLATGSWDSTVHIWDLRMVTPAVSHQALEGHSANISCLCYSASGLLASGSWDKTIHIWKPTTSSLLIQLKGHVTWVKSIA...
>Loxodonta africana@ENSLAFP00000008398
AGWPGPMNNRAPGTL*AVGRVKYFGRHHGEVNSSAFSPNGQTLLTASDDGCVYGWETQTGQLLWKLGGHTGAVKFCRFSPDGRLFASTSCDCTIRLWDVARA*KCLQVLKGHQRSVETVSFSPDSRQLASGGWDKRVMLWEVQTGSRLFLHSFVLLAQTLLWFRFSPSADCLATGSWDSTVRIWDLRAGTPKTFHHKLEGHSGNISCVCYSPSGLLASGSWDKTIRIWKPQPASLLVQLKGHVTWVKSIA...
>Latimeria chalumnae@ENSLACP00000020944
*******MWRNPIESFVITNIKYFPEHKGEVNSCAFSPDCQILLACSDDNRVYVWNVKTQKLICKVKGHTGPVNACAFSPDCSIFASASHDCTVRVWKTATT*ECLHVLKDHLKSVETVCFNPDSRQLLSAGWDYTAILWDAQLGLN**LKTFYGHQDVIQSSAFSLNGQFLATGSWDYTAKLWNLRKDE***PEKTLEGHKGNVSCVCFSVSGMLATGSWDRTVRVWNPKKGVLIFLLEGHSGWVKSVA...
>Monodelphis domestica@ENSMODP00000024654
*********KSWAPL*TVGSVKYYSRHKGEVNSCAFSPDTRILLTCCDDNQVYMWESRSGRLLRKLQGHTGPVRFCKFSPNGKYFASASRDCTVRLWDAKTSIICLHVLKGHSRSVETVSFSSNSKRLVSGGWDHKAILWDVKKGQM**ITELLGHHDAIQSSDFSSVSEYLATGSWDSTVQVWDLSILG*NIRKKTLEGHEGNVSCVCFSPSGLLASGSWDKTIRIWNPETGKLLIQLLGHLTWVKSMA...
>Macropus eugenii@ENSMEUP00000006091
******************************VNSCAFSPDTRILLTCCDDNKVYMWGARTGNLLRKLQGHKGPVSFCRFSPDGKFFASASRDCTVRLWDAQTT*KCLQVLKGHSRGVETVSFSSDSKQLASGGWDRKAILWEVQ***********GHRDAIQSSDFSPSSEYLATGSWDSTVQVWDLRAIR**LKKKILEGHKGNVSCVCFSPSGLLASGSWDKTICIWKPETGKLLSKLLGHLTWVKSMA...
>Mus musculus@ENSMUSP00000043834
MEW*APMNIRAPTRL*AVGRVRFYGQHHGEVNCSAFSPDGRTLLTASDDGCVYVWGTKSGRLLWRLAGHRGPVKSCCFSPDGRLIASSSSDHSIRLWDVARS*KCLHVLKGHQRSVETVSFSPDSKQLASGGWDKRAIVWEVQSGRR**VHLLVGHCDSIQSSDFSPTSDSLATGSWDSTVHIWDLRASTPVVSYHNLEGHTGNISCLCYSASGLLASGSWDKTICVWKPTTNNLPLQLKGHTIWVNSLA...
>Protopterus annectens@comp482267_c0_seq1
*********************************************************************************************ARVWKTSTA*ECLHILKGHSKIVETVCFSPDSRQLLTGGWDCTAILWDVQSGHH**MKTFYGHESAIQCSAFAPNGQYLATGSWDYTVKIWDLLKEG***KEKTLNGHRGNISCVSFSKLGMLASSSWDKTVRVWNPKSEALIFLLNGHSGWVKSLA...
>Xenopus tropicalis@ENSXETP00000036715
*******MWKNPSEYFATATVKYFERHKGEVNSCALSPDCHLLLTCSDDSRIHLWEAKSGTLKQKVTGHTGPVKSCCFSPDGLLFASSSHDCTVRIWKVDTV*ECLHVLRDHSKSVETVCFSPDSRYLLSGGWDCTAILWEVQNGQK**RKVYHGHRDAIQCGAFSLNGSYIATGSWDYTVRVWIAQNKG***TDKILEGHKSNVSCVCFSISGMLASGSWDKTVCVWNPRNGSLIFLLKGHSGWVRNIT...

test/GNTPAN19639.ali view on Meta::CPAN

>Canis familiaris@ENSCAFP00000029023
MPKSCAARQCCNRYSSRRKQLTFHRFPFSRPELLKEWVLNIGRANFKPKQHTVICSEHFRPECFSAFGNRKNLKQNAVPTVFAFQDATQLARENADPAGGDTNVDSHNRPQVASEVVPAECGWGRKLEAALE**VLPPMASGPAEQVVPRR**LQGTQAPAQ*QASP******SPAQTSDHSYALLDLDALKKKLFLTLKENEKLRKRLKAQRLVIRRMSSRLRAHRAGPP*******************...
>Homo sapiens@ENSP00000054650
MPKSCAARQCCNRYSSRRKQLTFHRFPFSRPELLKEWVLNIGRGNFKPKQHTVICSEHFRPECFSAFGNRKNLKHNAVPTVFAFQDPTQQVRENTDPASERGNASSSQKEKVLPEAGAGEDSPGRNMDTALEELQLPPNAEGHVKQVSPRR**PQATEAVGR*PTGPAGLRRTPNKQPSDHSYALLDLDSLKKKLFLTLKENEKLRKRLQAQRLVMRRMSSRLRACK*GHQGLQA***************...
>Loxodonta africana@ENSLAFP00000013404
MPKSCAARQCCNRYSNRRKQLTFHRFPFSRPELLKEWVLNIGRGNFKPKQHTVICSEHFRPECFSAFGNRKNLKHNAVPTVFAFQDPTQ**********************VLPMAGV**DGTGRSMDTTLDELQVPPNAEAPGKEVLPYR**LEAAEAPAR*PASPMGLKQSLPKQPSDHSYALLDLDALKKKLFLTLKENEKLRKRLRAQRLEMRRMCRRLSARREGRQRAQA***************...
>Latimeria chalumnae@ENSLACP00000017875
MPKSCAALDCRSRYSNKNKELTFHRFPFSKPDLLKEWMENIGRVDFEPKQHTVICSKHFKPECFNKFGNRKNLNHNAVPTIFT***SSRLAKESS*ASETISNQETRTP*********ALEMVLMQEGPLLVVPELAATVEVDDTN*******LKPLQAAYNLQEPPLSGRAS****DPDHNYALKSSASLKRRLFLTLEENEKLQKRLKLKTEGLRRITLKLHEVKRELDKLRGGHKPPLTTTKSPHVS...
>Monodelphis domestica@ENSMODP00000007324
MPKSCAARQCCNRYSSRRKQLTFHRFPFSRPELLKEWVLNIGRGNFKPKQHTVICSEHFKPDCFSAFGNRKNLKQNAVPTVFAFQETAQLVRENTDPAAERSDAQAQQLGKDFSGAGAREYTPGRKMEIPLDKHQLSPDAEASEKEVSSYR**TEEAESHLL*PTCPTGQKGSLSLPESDHSYALLDLDALKKKLVLTLKENERLRKRLKLQRVAMRRMSSRLQALQEEKRRQKA***************...
>Macropus eugenii@ENSMEUP00000001866
*************************FPFSRPELLKEWVLNIGRGNFKPKQHTVICSEHFKPDCFSAFGNRKNLKQNAVPTVFAFQDTAQLVRENTDPAGQRSD********DFSDAGAGEYTSGRKMEHPLDKPQLPPEAEASEKE***************L*PPSPLGQRGSLSLPASDHSYALLDLDALKKKLVLTLKENERLRRRLKMQRVAMKRMSSRLQALQEEKR*******************...
>Mus musculus@ENSMUSP00000035240
MPKSCAARQCCNRYSSRRKQLTFHRFPFSRPELLREWVLNIGRADFKPKQHTVICSEHFRPECFSAFGNRKNLKHNAVPTVFAFQNPTE**********************VCPEVGAGGDSSGRNMDTTLEELQ*PPTPEGPVQQVLPDREAMEATEAAGL*PASPLGLKRPLPGQPSDHSYALSDLDTLKKKLFLTLKENKRLRKRLKAQRLLLRRTCGRLRAYREGQPGPRA***************...
>Protopterus annectens@comp33466_c0_seq1
MPKSCAALRCGNRYNSKNKDLTFHRFPFSKPELLKEWLENVGREDFTPKLHTVICSKHFKPECFSPFGNRKNLKHNAVPTIFNN*****CLEKAKDPNAFPSHHPVLEP***********NSATVEIVVELEDDSTCPQVGINKN***********MEMATQITQSACALRQQISVPTMDHSYAIKDCNLLKKQFFQMLEQNKRLRKQIKMKTKEIRRMSATLWVVKNELRQLKA***************...
>Dasypus novemcinctus@ENSDNOP00000010734
*****************************************************************************************LVRKNTDPAGERRNADSLE*GKVLGEAAAEEHSTGTDADTALEEHQQPPSARAP*TEVAPCG**LGAAEAPGR*PARPTGPRRPAPKQPSDHSYALLDLDALKKKLFLTLKENKKLRKRLKAQRLEMRRLSSRLRPHGDGQRRPQS***************...
>Danio rerio@ENSDARP00000060192
MPKSCSASNCTNRYNNKNPEITFHRFPFSKPSVLKQWLDNIGRDDFQPRKHMVICSLHFTPDCFSGLGNRKNLLWNAVPTLFAV**PTQDANQNNSRKRQKR*********ALKSAAEKWDGITPDGLPLFTEEMHEDTQDCNNNEVADCQ********************STKVFAAADHTYALSDACTTKARLFNILDANRWLRKRLQAKCRVIKRMKLKLKDAQRELLTLRQ***************...

test/GNTPAN19649.ali view on Meta::CPAN

>Danio rerio@ENSDARP00000095196
M********************PLKRVVIVPGNGAGDVERSNWYGWANKRIN**EIPDL****SCALKNMPDPVTARESVWLPFMEKDLKCDEETLIIGHSSGAAAAMRYAETHKVFAIILVGAYTSHLGDENERESGYFSRPWEWEKIRANVEYILQFGSTDDPFLPWDEQQEVADGLKTDLHKYSDRGHFQNTAFPELIDAVNKLKTN*S
>Homo sapiens@ENSP00000336866
M*******************ASPSKAVIVPGNGGGDVTTHGWYGWVKKELE**KIPGF****QCLAKNMPDPITARESIWLPFMETELHCDEKTIIIGHSSGAIAAMRYAETHRVYAIVLVSAYTSDLGDENERASGYFTRPWQWEKIKANCPYIVQFGSTDDPFLPWKEQQEVADRLETKLHKFTDCGHFQNTEFHELITVVKSLLKVPA
>Loxodonta africana@ENSLAFP00000001073
M*******************ASPSKAVIVPGNGGGDVATHGWYGWVRKRLE**RIPGF****QCLAKNMPDPITAQESIWLPFMETELHCDEKTIVIGHSSGAIAAMRYAETRRVYAIVLVSAYTSDLGDENERASGYFSRPWQWEKIKANCSHIVQFGSTDDPFLPWKEQQEVADKLEAKLYKFTDRGHFQNTEFHELISVVKSMLKVPA
>Latimeria chalumnae@ENSLACP00000010432
HCSCGPRKLHEFFADLLGYNMSPLKAVIVPGNGGGNVEYCNWYGWAKKQLN**KVPNF****QCLLKNMPDPITARESIWLPFMESELKCDEETVIIGHSSGAAAAMRYAETHKVYAIVLVSAYTSDLGDANERESGYFSRPWQWENIKSNCCCIVQFGSTDDPFLPWKEQQEAADGLGAELHKFTDKGHFQNTEFSELIDVVQKMLTT*T
>Monodelphis domestica@ENSMODP00000006991
M*******************VSPSKAVIVPGNGGGDVVTHGWYGWVKKRLE**KIPDF****QCLSQNMPDPIIARESIWLPFMESEFHCDEKTIIIGHSSGAIAAMRYAETHRVYAIILVSAYTSDLGDENERASGYFNRPWQWEKIKSNCQHIVQFGSTDDPFLPWSEQQEVANELGAKLHKFTDRGHFQNTEFNELVNVVQSMLNVPA
>Macropus eugenii@ENSMEUP00000011272
M*******************VSPSKAVIVPGNGGGNVVTHGWYGWVKKRLE**EIPNF****QCLSQNMPDPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYAETHRVYAIILVSAYTSDLGDXXXXXXXYFNRPWQWEKIKSNCQHIVQFGSTDDPFLPWSEQQEVADELGAKLHKFTDRGHFQNTEFSELVSVVQSMLNVPA
>Mus musculus@ENSMUSP00000028915
M*******************ASPNKAVIVPGNGGGDVATHGWYGWVKKGLE**QIPGF****QCLAKNMPDPITARESIWLPFMETELHCDEKTIIIGHSSGAIAAMRYAETHQVYALVLVSAYTSDLGDENERASGYFSRPWQWEKIKANCPHIVQFGSTDDPFLPWKEQQEVADRLDAKLYKFTDRGHFQNTEFHELISVVKSMLKGPE
>Protopterus annectens@comp13196_c0_seq1
M**************SVDKIFPATKAVIVPGNGGGSVEYCNWYGWTRKALN**KIPNF****QCYLRDMPDPMTARESIWLPFMESELQCDERTVIIGHSSGAAAAMRYAETHKVYAIILVSAYTSDLGDDNERESGYFNRSWQWEKIKSNCKHIIQFGSTDDPFLPWSEQQEVVDKLGAVLHKYQDRGHFQNTQFHELVSAVQDLLQESQ

test/bmge.fasta view on Meta::CPAN

-F-FALTMLLSGVSNPILKNIFDRERPT---------------LL-RL------I-D-IS
GFSFPSGHAMGSTAFFGSVIY-VAHR-I---------------------L-KG--KAKS-
------VAMTLSVLMIVLISSSRVYLGVHYPT--------------------DIMAGIVG
GLFCIVLT-QL-I--------------------------L------------------R-
-----------HPLAQTKI-----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
-------------------------------
>Macrococcus caseolyticus_458233@BAH17775
-------------MSQAKR-----------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
---------------------------------------------ILLI--------LI-
--F--SFI----FG-----------MIA----FFH----E-SR----IGK-WIDNEVY-E
FI-----------------YS-------------------------SESF----------
ITTTIMLGFTKIGE-V-WSMILLS-----LLL-VCYL-LLK-K-L----KI-----DAL-

test/bmge_loose.fasta view on Meta::CPAN

LGVHYPSDVVAGYCAGLVWLL
>Staphylococcus_massiliensis_1229783@EKU47500
ATKIAESLSGTLILKNIFDRERPTGFSFPSGHAMGSTAFFGSLMYLCALFILLISSSRVY
LGVHFPTDIIAGIIGGTFCIV
>Staphylococcus_aureus_282458@CAG40426
ATKVGEALSGILALKNIFDRERPTGFSFPSGHAMGSTAYFGSSIYLCAAMILLISISRVY
LGVHYPTDIIAGIIGGVFCII
>Staphylococcus_pseudintermedius_984892@ADX76632
ATQIGELLSGVSILKNIFDRERPTGFSFPSGHAMGSTAFFGSVIYLSVLMIVLISSSRVY
LGVHYPTDIMAGIVGGLFCIV
>Macrococcus_caseolyticus_458233@BAH17775
FTKIGEILSGVLLLKNIFDRERPTGFSFPSGHAMGSCAFFGSLAIMCVFTILMISSSRVY
LGVHYPTDIIAGVIGGAVCIL
>Staphylococcus_pettenkoferi_904314@EHM72354
ITKIGEGLSTILLLKNIFDRERPTGYSFPSGHAMGSIAFFGSLIYICALFILGICSSRIY
LGVHYPTDIMAGLLGGGSSLI
>Staphylococcus_simulans_883166@EKS25136
ATWIGEAVSSISIMKNTIDRERPTGYSFPSGHAQGSTSFFGSLIAFCIFMIAMICMSRIY
LGVHYPTDVIAGVLAGAVCIL
>Carnobacterium_sp._208596@AEB29259
ITDLGGLGAGLLLVKFLFQRTRPTGYSFPSGHSMASLICYGGIAFLAALIIIIIGISRIY

test/bmge_medium.fasta view on Meta::CPAN

>Desulfotomaculum_carboxydivorans_868595@AEF93225
HRIRPSYSFPSGHSILLVGLSRIYLGVHYPSDVLAAY
>Bacillus_macauensis_1196324@EIT85841
KRQRPNFSFPSGHAIMAIGVSRIYLGVHYPSDVVAGY
>Staphylococcus_massiliensis_1229783@EKU47500
DRERPTFSFPSGHAILLISSSRVYLGVHFPTDIIAGI
>Staphylococcus_aureus_282458@CAG40426
DRERPTFSFPSGHAILLISISRVYLGVHYPTDIIAGI
>Staphylococcus_pseudintermedius_984892@ADX76632
DRERPTFSFPSGHAIVLISSSRVYLGVHYPTDIMAGI
>Macrococcus_caseolyticus_458233@BAH17775
DRERPTFSFPSGHAILMISSSRVYLGVHYPTDIIAGV
>Staphylococcus_pettenkoferi_904314@EHM72354
DRERPTYSFPSGHAILGICSSRIYLGVHYPTDIMAGL
>Staphylococcus_simulans_883166@EKS25136
DRERPTYSFPSGHAIAMICMSRIYLGVHYPTDVIAGV
>Carnobacterium_sp._208596@AEB29259
QRTRPTYSFPSGHSIIIIGISRIYLGVHFPSDVIGGF
>Bacillus_thuringiensis_1195464@AFU12901
ERARPDYSFPSGHTVLSISVSRIYLGVHFPSDILAGW
>Paenibacillus_sp._481743@ACX66507

test/bmge_strict.fasta view on Meta::CPAN

>Desulfotomaculum_carboxydivorans_868595@AEF93225
YSFPSGHSLVGLSRIYLGVHYPSDVLAAY
>Bacillus_macauensis_1196324@EIT85841
FSFPSGHAAIGVSRIYLGVHYPSDVVAGY
>Staphylococcus_massiliensis_1229783@EKU47500
FSFPSGHALISSSRVYLGVHFPTDIIAGI
>Staphylococcus_aureus_282458@CAG40426
FSFPSGHALISISRVYLGVHYPTDIIAGI
>Staphylococcus_pseudintermedius_984892@ADX76632
FSFPSGHALISSSRVYLGVHYPTDIMAGI
>Macrococcus_caseolyticus_458233@BAH17775
FSFPSGHAMISSSRVYLGVHYPTDIIAGV
>Staphylococcus_pettenkoferi_904314@EHM72354
YSFPSGHAGICSSRIYLGVHYPTDIMAGL
>Staphylococcus_simulans_883166@EKS25136
YSFPSGHAMICMSRIYLGVHYPTDVIAGV
>Carnobacterium_sp._208596@AEB29259
YSFPSGHSIIGISRIYLGVHFPSDVIGGF
>Bacillus_thuringiensis_1195464@AFU12901
YSFPSGHTSISVSRIYLGVHFPSDILAGW
>Paenibacillus_sp._481743@ACX66507

test/get_taxid_from_legacy_seq_id.test view on Meta::CPAN

Prochlorococcus sp._scb245a_518i6@1	1471505
Prochlorococcus sp._scb243_498g3@1	1471492
Prochlorococcus sp._scb243_498f21@1	1471491
Prochlorococcus sp._scb243_498c16@1	1471490
Prochlorococcus sp._scb243_497i20@1	1471484
Prochlorococcus sp._scb243_495n3@1	1471475
Prochlorococcus sp._scb241_526b19@1	1471438
Prochlorococcus sp._mit0602@1	1499499
Phaeocystis sp._CCMP2710@1	1411682
Oryza sativa_indicagroup@1	39946
Macrocystis pyrifera_KJU18M@1	4201000166
Echinochloa crusgalli_var.crusgalli@1	338575
Dinobryon sp._UTEXLB2267@1	4201000167
Babesia microti_strainri@1	1133968
Amphora coffeaeformis_CCMP127@1	4201000168
Toxoplasma gondii_me49@1	508771
Timspurckia oligopyrenoides_CCMP3278@1	4201000169
Theileria orientalis_strainshintoku@1	869250
Pseudonitzschia delicatissima_UNC1205@1	4201000170
Prochlorococcus sp._scb245a_521o23@1	1471532
Prochlorococcus sp._scb245a_519c7@1	1471511

test/get_taxid_from_seq_id.test view on Meta::CPAN

Prochlorococcus sp._scb245a_518i6@1	1471505
Prochlorococcus sp._scb243_498g3@1	1471492
Prochlorococcus sp._scb243_498f21@1	1471491
Prochlorococcus sp._scb243_498c16@1	1471490
Prochlorococcus sp._scb243_497i20@1	1471484
Prochlorococcus sp._scb243_495n3@1	1471475
Prochlorococcus sp._scb241_526b19@1	1471438
Prochlorococcus sp._mit0602@1	1499499
Phaeocystis sp._CCMP2710@1	1411682
Oryza sativa_indicagroup@1	39946
Macrocystis pyrifera_KJU18M@1	4201000166
Echinochloa crusgalli_var.crusgalli@1	338575
Dinobryon sp._UTEXLB2267@1	4201000167
Babesia microti_strainri@1	1133968
Amphora coffeaeformis_CCMP127@1	4201000168
Toxoplasma gondii_me49@1	508771
Timspurckia oligopyrenoides_CCMP3278@1	4201000169
Theileria orientalis_strainshintoku@1	869250
Pseudonitzschia delicatissima_UNC1205@1	4201000170
Prochlorococcus sp._scb245a_521o23@1	1471532
Prochlorococcus sp._scb245a_519c7@1	1471511

test/speclist.idm view on Meta::CPAN

Emys orbicularis	Eorb
Eublepharis macularius	Emac
Gallus gallus	Ggal
Homo sapiens	Hsap
Hymenochirus curtipes	Hcur
Lampropholis coggeri	Lcog
Latimeria chalumnae	Lcha
Lepisosteus oculatus	Locu
Leucoraja erinacea	Leri
Loxodonta africana	Lafr
Macropus eugenii	Meug
Meleagris gallopavo	Mgal
Monodelphis domestica	Mdom
Mus musculus	Mmus
Notophthalmus viridescens	Nvir
Oreochromis niloticus	Onil
Ornithorhynchus anatinus	Oana
Pelodiscus sinensis	Psin
Phrynops hilarii	Phil
Pipa_pipa	Ppip
Podarcis sp	Psp_

test/tricky.names view on Meta::CPAN

Lampea pancerina
Lankesteria abbottii
Lankesteria abbottii_GrapplerInletBC
Lankesteria abbottii
Laodelphax striatellus
Lepismachilis ysignata
Leptogorgia sarmentosa
Leucosolenia variabilis
Lotharella oceanica_CCMP622
Lucernariopsis campanulata
Macrobrachium rosenberegii
Madagascaria erythrocladiodes_CCMP3234
Manchomonas bermudensis
Microsporum canis
Molgula gulf
Mollusca Nemertoderma
Monacrosporium haptotylum
Mycosphaerella graminicola_ipo323
Mycosphaerella populorum_so2202
Nitrosopumilus koreensis_ar1
Nitzschia sp._chengr2013

test/tricky.tax view on Meta::CPAN

Lampea pancerina	Lampea pancerina_1532213	1532213	cellular organisms; Eukaryota; Opisthokonta; Metazoa; Eumetazoa; Ctenophora; Tentaculata; Cydippida; Lampeidae; Lampea; Lampea pancerina
Lankesteria abbottii	MISSING	MISSING	MISSING
Lankesteria abbottii_GrapplerInletBC	MISSING	MISSING	MISSING
Lankesteria abbottii	MISSING	MISSING	MISSING
Laodelphax striatellus	Laodelphax striatella_195883	195883	cellular organisms; Eukaryota; Opisthokonta; Metazoa; Eumetazoa; Bilateria; Protostomia; Ecdysozoa; Panarthropoda; Arthropoda; Mandibulata; Pancrustacea; Hexapoda; Insecta; Dicondylia; Pteryg...
Lepismachilis ysignata	Lepismachilis sp._279265	279265	cellular organisms; Eukaryota; Opisthokonta; Metazoa; Eumetazoa; Bilateria; Protostomia; Ecdysozoa; Panarthropoda; Arthropoda; Mandibulata; Pancrustacea; Hexapoda; Insecta; Monocondylia; Archaeog...
Leptogorgia sarmentosa	Leptogorgia sarmentosa_1502934	1502934	cellular organisms; Eukaryota; Opisthokonta; Metazoa; Eumetazoa; Cnidaria; Anthozoa; Octocorallia; Alcyonacea; Holaxonia; Gorgoniidae; Leptogorgia; Leptogorgia sarmentosa
Leucosolenia variabilis	Leucosolenia variabilis_1820126	1820126	cellular organisms; Eukaryota; Opisthokonta; Metazoa; Porifera; Calcarea; Calcaronea; Leucosolenida; Leucosoleniidae; Leucosolenia; Leucosolenia variabilis
Lotharella oceanica_CCMP622	Lotharella oceanica_GCA_000698435.2	GCA_000698435.2	cellular organisms; Eukaryota; Rhizaria; Cercozoa; Chlorarachniophyceae; Lotharella; Lotharella oceanica
Lucernariopsis campanulata	Calvadosia campanulata_1843190	1843190	cellular organisms; Eukaryota; Opisthokonta; Metazoa; Eumetazoa; Cnidaria; Staurozoa; Stauromedusae; Amyostaurida; Kishinouyeidae; Calvadosia; Calvadosia campanulata
Macrobrachium rosenberegii	Macrobrachium sp._6696	6696	cellular organisms; Eukaryota; Opisthokonta; Metazoa; Eumetazoa; Bilateria; Protostomia; Ecdysozoa; Panarthropoda; Arthropoda; Mandibulata; Pancrustacea; Crustacea; Malacostraca; Eumalacostraca; ...
Madagascaria erythrocladiodes_CCMP3234	Madagascaria erythrocladioides_753684	753684	cellular organisms; Eukaryota; Rhodophyta; Compsopogonophyceae; Erythropeltidales; Erythrotrichiaceae; Madagascaria; Madagascaria erythrocladioides
Manchomonas bermudensis	MISSING	MISSING	MISSING
Microsporum canis	Microsporum canis_63405	63405	cellular organisms; Eukaryota; Opisthokonta; Fungi; Dikarya; Ascomycota; saccharomyceta; Pezizomycotina; leotiomyceta; Eurotiomycetes; Eurotiomycetidae; Onygenales; Arthrodermataceae; Microsporum; Micro...
Molgula gulf	Molgula sp._27574	27574	cellular organisms; Eukaryota; Opisthokonta; Metazoa; Eumetazoa; Bilateria; Deuterostomia; Chordata; Tunicata; Ascidiacea; Stolidobranchia; Molgulidae; Molgula
Mollusca Nemertoderma	Mollusca sp._6447	6447	cellular organisms; Eukaryota; Opisthokonta; Metazoa; Eumetazoa; Bilateria; Protostomia; Lophotrochozoa; Mollusca
Monacrosporium haptotylum	Dactylellina haptotyla_430498	430498	cellular organisms; Eukaryota; Opisthokonta; Fungi; Dikarya; Ascomycota; saccharomyceta; Pezizomycotina; Orbiliomycetes; Orbiliales; Orbiliaceae; Dactylellina; Dactylellina haptotyla
Mycosphaerella graminicola_ipo323	Zymoseptoria tritici_336722	336722	cellular organisms; Eukaryota; Opisthokonta; Fungi; Dikarya; Ascomycota; saccharomyceta; Pezizomycotina; leotiomyceta; dothideomyceta; Dothideomycetes; Dothideomycetidae; Capnodiale...
Mycosphaerella populorum_so2202	Sphaerulina musiva_692275	692275	cellular organisms; Eukaryota; Opisthokonta; Fungi; Dikarya; Ascomycota; saccharomyceta; Pezizomycotina; leotiomyceta; dothideomyceta; Dothideomycetes; Dothideomycetidae; Capnodiales; M...
Nitrosopumilus koreensis_ar1	Nitrosopumilus koreensis_GCA_000299365.1	GCA_000299365.1	cellular organisms; Archaea; TACK group; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; Nitrosopumilus; Candidatus Nitrosopumilus koreensis; Candidatus Nitros...
Nitzschia sp._chengr2013	Nitzschia sp._1324132	1324132	cellular organisms; Eukaryota; Stramenopiles; Bacillariophyta; Bacillariophyceae; Bacillariophycidae; Bacillariales; Bacillariaceae; Nitzschia; unclassified Nitzschia; Nitzschia sp. ChengR-2013

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