Bio-MUST-Apps-OmpaPa
view release on metacpan or search on metacpan
t/ompa_pa.t view on Meta::CPAN
* Haloplasma_contractile_1033810@EGM29912 none 239 2.2e-51 1 1 0.915 1.122
* Psychrobacter_sp._349106@ABQ94025 none 331 2.6e-51 1 1 0.911 1.554
* Lactobacillus_sp._872326@CCK84127 none 221 3.6e-51 1 1 0.915 1.038
* Staphylococcus_aureus_282458@CAG40426 none 204 3.8e-51 1 1 0.887 0.958
* Pediococcus_acidilactici_1306952@EOA08128 none 211 3.8e-51 1 1 0.901 0.991
* Bifidobacterium_gallicum_561180@EFA22864 none 232 4.1e-51 1 1 0.911 1.089
* Ktedonobacter_racemifer_485913@EFH90230 none 294 4.3e-51 1 1 0.906 1.380
* Bacillus_nealsonii_1202533@EOR24990 none 219 4.6e-51 1 1 0.934 1.028
* Atopobium_parvulum_521095@ACV51745 none 238 4.7e-51 1 1 0.920 1.117
* Psychrobacter_cryohalolentis_335284@ABE75027 none 331 5.3e-51 1 1 0.930 1.554
* Macrococcus_caseolyticus_458233@BAH17775 none 207 6.5e-51 1 1 0.901 0.972
* Listeria_monocytogenes_1639@CCQ21097 none 217 7.3e-51 1 1 0.897 1.019
* Hyphomonas_neptunium_228405@ABI75362 none 230 8.9e-51 1 1 0.901 1.080
* Bacillus_sp._666686@AGK52556 none 225 1.2e-50 1 1 0.911 1.056
* Scardovia_wiggsiae_857290@EJD64896 none 326 1.3e-50 1 1 0.897 1.531
* Aerococcus_urinae_866775@AEA01410 none 295 1.7e-50 1 1 0.887 1.385
* Solobacterium_moorei_706433@EFW24906 none 209 2.7e-50 1 1 0.906 0.981
* Brevibacillus_sp._1144311@EJL41297 none 222 3.4e-50 1 1 0.892 1.042
* Dolosigranulum_pigrum_883103@EHR35184 none 218 4e-50 1 1 0.901 1.023
* Truepera_radiovictrix_649638@ADI14034 none 279 4.4e-50 1 1 0.939 1.310
* Listeria_grayi_525367@EFI84470 none 232 4.8e-50 1 1 0.934 1.089
t/ompa_pa.t view on Meta::CPAN
* Haloplasma_contractile_1033810@EGM29912 none 239 2.2e-51 1 1 0.915 1.122
* Psychrobacter_sp._349106@ABQ94025 none 331 2.6e-51 1 1 0.911 1.554
* Lactobacillus_sp._872326@CCK84127 none 221 3.6e-51 1 1 0.915 1.038
* Staphylococcus_aureus_282458@CAG40426 none 204 3.8e-51 1 1 0.887 0.958
* Pediococcus_acidilactici_1306952@EOA08128 none 211 3.8e-51 1 1 0.901 0.991
* Bifidobacterium_gallicum_561180@EFA22864 none 232 4.1e-51 1 1 0.911 1.089
* Ktedonobacter_racemifer_485913@EFH90230 none 294 4.3e-51 1 1 0.906 1.380
* Bacillus_nealsonii_1202533@EOR24990 none 219 4.6e-51 1 1 0.934 1.028
* Atopobium_parvulum_521095@ACV51745 none 238 4.7e-51 1 1 0.920 1.117
* Psychrobacter_cryohalolentis_335284@ABE75027 none 331 5.3e-51 1 1 0.930 1.554
* Macrococcus_caseolyticus_458233@BAH17775 none 207 6.5e-51 1 1 0.901 0.972
* Listeria_monocytogenes_1639@CCQ21097 none 217 7.3e-51 1 1 0.897 1.019
* Hyphomonas_neptunium_228405@ABI75362 none 230 8.9e-51 1 1 0.901 1.080
* Bacillus_sp._666686@AGK52556 none 225 1.2e-50 1 1 0.911 1.056
* Scardovia_wiggsiae_857290@EJD64896 none 326 1.3e-50 1 1 0.897 1.531
* Aerococcus_urinae_866775@AEA01410 none 295 1.7e-50 1 1 0.887 1.385
* Solobacterium_moorei_706433@EFW24906 none 209 2.7e-50 1 1 0.906 0.981
* Brevibacillus_sp._1144311@EJL41297 none 222 3.4e-50 1 1 0.892 1.042
* Dolosigranulum_pigrum_883103@EHR35184 none 218 4e-50 1 1 0.901 1.023
* Truepera_radiovictrix_649638@ADI14034 none 279 4.4e-50 1 1 0.939 1.310
* Listeria_grayi_525367@EFI84470 none 232 4.8e-50 1 1 0.934 1.089
test/blastp.out view on Meta::CPAN
<Hsp_gaps>19</Hsp_gaps>
<Hsp_align-len>129</Hsp_align-len>
<Hsp_qseq>IVLVLYKKYNDFVALYLSVLGSAVFLYLCKLVFQRPRPET---ALYIESSYSFPSGHA----TIAVAFYGFLGYLLIRHVDALKSKINIFF--ITTILVLLIGLSRIYLGEHYISDVYSGYLIGSLWVI</Hsp_qseq>
<Hsp_hseq>IVFAYQKRWRLLAYLSLTIASSALVNIIAKAIFHRLRPELWELSYALPHSFSFPSGHAMGSMTLVVALL-----IMIK-----KSRWSLLWGILGSLYILLIGWTRLYLGFHYPSDILGGWLLATTWTI</Hsp_hseq>
<Hsp_midline>IV K++ L L++ SA+ + K +F R RPE + + S+SFPSGHA T+ VA ++I+ KS+ ++ + + ++ +LLIG +R+YLG HY SD+ G+L+ + W I</Hsp_midline>
</Hsp>
</Hit_hsps>
</Hit>
<Hit>
<Hit_num>178</Hit_num>
<Hit_id>Macrococcus_caseolyticus_458233@BAH17775</Hit_id>
<Hit_def>No definition line</Hit_def>
<Hit_accession>Macrococcus_caseolyticus_458233@BAH17775</Hit_accession>
<Hit_len>207</Hit_len>
<Hit_hsps>
<Hsp>
<Hsp_num>1</Hsp_num>
<Hsp_bit-score>60.8474</Hsp_bit-score>
<Hsp_score>146</Hsp_score>
<Hsp_evalue>7.9503e-13</Hsp_evalue>
<Hsp_query-from>340</Hsp_query-from>
<Hsp_query-to>450</Hsp_query-to>
<Hsp_hit-from>89</Hsp_hit-from>
test/blastp.out view on Meta::CPAN
<Hsp_gaps>9</Hsp_gaps>
<Hsp_align-len>174</Hsp_align-len>
<Hsp_qseq>DIRIANLFYILRNDTLTHIFTWITLLGKLEIITVVVLSSLIILFIWHKKYFIYPFLVAAIGSLSFTW--LGKLAFQRARPEFAVYLEDS-FSFPSGHSSIAVAIYGFLGYLLIRSTHYWSHKVNLFFATAILALLIGFSRVYLGVHYISDVWSGYLVGAMWLIIGITLSEWLRH</Hsp_qseq>
<Hsp_hseq>DNEVYNLIYASESFISTAIFFGATQIG--EVWAMIALSLVMVALLMLYRYKIEALFFALTMLLSGVSNPILKNIFDRERPTLLRLIDISGFSFPSGHAMGSTAFFGSVIYVAHRILKGKAKSVAMTL-SVLMIVLISSSRVYLGVHYPTDIMAG-IVGGLFCIVLTQL--ILRH</Hsp_hseq>
<Hsp_midline>D + NL Y + T IF T +G E+ ++ LS +++ + +Y I A LS + K F R RP ++ S FSFPSGH+ + A +G + Y+ R + V + + ++ +LI SRVYLGVHY +D+ +G +VG ++ I+ L LRH</Hsp_midline>
</Hsp>
</Hit_hsps>
</Hit>
<Hit>
<Hit_num>177</Hit_num>
<Hit_id>Macrococcus_caseolyticus_458233@BAH17775</Hit_id>
<Hit_def>No definition line</Hit_def>
<Hit_accession>Macrococcus_caseolyticus_458233@BAH17775</Hit_accession>
<Hit_len>207</Hit_len>
<Hit_hsps>
<Hsp>
<Hsp_num>1</Hsp_num>
<Hsp_bit-score>52.373</Hsp_bit-score>
<Hsp_score>124</Hsp_score>
<Hsp_evalue>5.01712e-10</Hsp_evalue>
<Hsp_query-from>187</Hsp_query-from>
<Hsp_query-to>278</Hsp_query-to>
<Hsp_hit-from>102</Hsp_hit-from>
test/blastp.out view on Meta::CPAN
<Hsp_gaps>6</Hsp_gaps>
<Hsp_align-len>167</Hsp_align-len>
<Hsp_qseq>DIMFSNLIYHFRNVSVVKIMLFITMFGNKKTIIVITAMSIILFLIYRKRKCIFPLFV--SIVGSTATTWSIKFILHRPRP-LEAYYSAVGYSFPSGHATISAAFYGFLTYFYITQAKKLKSKFNIAMAGLAV-VILIGASRIYLDVHYFSDVWAGYLIGSCWLIIAI</Hsp_qseq>
<Hsp_hseq>DQLFSSAVQSEFMMFLEPVMRLITMIADTK-LGLIYAVLIAAYLWLRQGQRVDAIWVICTMFGGAVVAYLLKEFVKRPRPTIAQIVPETGYSMPSGHTFEAFLVLAFLYLFFVRPMAESSLK-KACTAGLVIWQILVIWSRIFMGAHYLTDTLVAVGLGTVWLWVAI</Hsp_hseq>
<Hsp_midline>D +FS+ + + + +M ITM + K + +I A+ I +L R+ + + ++V ++ G + +K + RPRP + GYS PSGH + FL F++ + K AGL + IL+ SRI++ HY +D +G+ WL +AI</Hsp_midline>
</Hsp>
</Hit_hsps>
</Hit>
<Hit>
<Hit_num>179</Hit_num>
<Hit_id>Macrococcus_caseolyticus_458233@BAH17775</Hit_id>
<Hit_def>No definition line</Hit_def>
<Hit_accession>Macrococcus_caseolyticus_458233@BAH17775</Hit_accession>
<Hit_len>207</Hit_len>
<Hit_hsps>
<Hsp>
<Hsp_num>1</Hsp_num>
<Hsp_bit-score>55.8398</Hsp_bit-score>
<Hsp_score>133</Hsp_score>
<Hsp_evalue>4.87583e-11</Hsp_evalue>
<Hsp_query-from>354</Hsp_query-from>
<Hsp_query-to>447</Hsp_query-to>
<Hsp_hit-from>101</Hsp_hit-from>
test/blastp.out view on Meta::CPAN
<Hsp_gaps>6</Hsp_gaps>
<Hsp_align-len>123</Hsp_align-len>
<Hsp_qseq>ISIILISYKKIK----ELLFFAVNFFGGLIFLISLKYIFNRERPVAIYHYFNEITPSFPSGHAFMSFITYGFAGFLIFKVVKNNYIKKIYYFSSIIIVFLIGFSRIYLGVHWFSDVIGAYVSG</Hsp_qseq>
<Hsp_hseq>LSLILVIYLALKRYYVEMLFFVFTMGLSTILNPLLKNIFDRERPTVL-RLVEASGYSFPSGHAMGSIAFFGSLIYLAHRLIKSKARIVVYIICALFILGICS-SRIYLGVHYPTDIMAGLLGG</Hsp_hseq>
<Hsp_midline>+S+IL+ Y +K E+LFF I LK IF+RERP + SFPSGHA S +G +L +++K+ +Y ++ I+ + SRIYLGVH+ +D++ + G</Hsp_midline>
</Hsp>
</Hit_hsps>
</Hit>
<Hit>
<Hit_num>176</Hit_num>
<Hit_id>Macrococcus_caseolyticus_458233@BAH17775</Hit_id>
<Hit_def>No definition line</Hit_def>
<Hit_accession>Macrococcus_caseolyticus_458233@BAH17775</Hit_accession>
<Hit_len>207</Hit_len>
<Hit_hsps>
<Hsp>
<Hsp_num>1</Hsp_num>
<Hsp_bit-score>54.6842</Hsp_bit-score>
<Hsp_score>130</Hsp_score>
<Hsp_evalue>1.11335e-10</Hsp_evalue>
<Hsp_query-from>284</Hsp_query-from>
<Hsp_query-to>444</Hsp_query-to>
<Hsp_hit-from>33</Hsp_hit-from>
test/blastp.out view on Meta::CPAN
<Hsp_gaps>25</Hsp_gaps>
<Hsp_align-len>99</Hsp_align-len>
<Hsp_qseq>FQRQRPFNM----THLMEFSFPSGHTAYSAFFYGFLAYALARGTTDRGKKVDLFFLWVLLVTA---------VGFSRLYIGVHYLSDVLAGALLGFSWL</Hsp_qseq>
<Hsp_hseq>FRRQRP-NLWVLPTQPTDYSYPSGHSMSAISFYGLLAV-----------YTSVFLSIPIIITGAIASVISMLVGFSRMYLGVHWASDVLGGWIAGSIWL</Hsp_hseq>
<Hsp_midline>F+RQRP N+ T ++S+PSGH+ + FYG LA +F +++T VGFSR+Y+GVH+ SDVL G + G WL</Hsp_midline>
</Hsp>
</Hit_hsps>
</Hit>
<Hit>
<Hit_num>158</Hit_num>
<Hit_id>Macrococcus_caseolyticus_458233@BAH17775</Hit_id>
<Hit_def>No definition line</Hit_def>
<Hit_accession>Macrococcus_caseolyticus_458233@BAH17775</Hit_accession>
<Hit_len>207</Hit_len>
<Hit_hsps>
<Hsp>
<Hsp_num>1</Hsp_num>
<Hsp_bit-score>52.373</Hsp_bit-score>
<Hsp_score>124</Hsp_score>
<Hsp_evalue>6.35498e-10</Hsp_evalue>
<Hsp_query-from>351</Hsp_query-from>
<Hsp_query-to>435</Hsp_query-to>
<Hsp_hit-from>102</Hsp_hit-from>
test/database.fasta view on Meta::CPAN
>Staphylococcus_aureus_282458@CAG40426
MSQWKRISLLIVFTLVFGIIAFFHESRLGKWIDNEVYEFIYSSESFITTSIMLGATKVGE
VWAMLCISLLLVAYLMLKRHKIEALFFALTMALSGILNPALKNIFDRERPTLLRLIDITG
FSFPSGHAMGSTAYFGSSIYLLNRLNQGNSKGILIGLCAAMILLISISRVYLGVHYPTDI
IAGIIGGVFCIILSTLLLRNKLIN
>Staphylococcus_pseudintermedius_984892@ADX76632
MTYWKKISLLIVFTLIFSMIAMFHESRLGRWIDNEVYNLIYASESFISTAIFFGATQIGE
VWAMIALSLVMVALLMLYRYKIEALFFALTMLLSGVSNPILKNIFDRERPTLLRLIDISG
FSFPSGHAMGSTAFFGSVIYVAHRILKGKAKSVAMTLSVLMIVLISSSRVYLGVHYPTDI
MAGIVGGLFCIVLTQLILRHPLAQTKI
>Macrococcus_caseolyticus_458233@BAH17775
MSQAKRILLILIFSFIFGMIAFFHESRIGKWIDNEVYEFIYSSESFITTTIMLGFTKIGE
VWSMILLSLLLVCYLLLKKLKIDALFFALSMILSGVLNPLLKNIFDRERPTLLRLIDITG
FSFPSGHAMGSCAFFGSLAILIKYHSNSSFKPYFIGMCVFTILMISSSRVYLGVHYPTDI
IAGVIGGAVCILLSQLILNKVIDNRSQ
>Staphylococcus_pettenkoferi_904314@EHM72354
MTRWKRILILIICIILFSLIALYHGAQIGREVDNGVYHFIFSSESFLTTTFFIGITKIGE
VYTMAVLSLILVIYLALKRYYVEMLFFVFTMGLSTILNPLLKNIFDRERPTVLRLVEASG
YSFPSGHAMGSIAFFGSLIYLAHRLIKSKARIVVYIICALFILGICSSRIYLGVHYPTDI
MAGLLGGGSSLILSTLILRHKLQI
>Staphylococcus_simulans_883166@EKS25136
test/database.mafft view on Meta::CPAN
----------------K----GKAK---------SVAM--T-LS---------VL--MIV
----L-IS---SSRVYLGVHYPT--------------------DIMAG----------IV
-----G------G------LF-----------C------IV-------------------
-----------------------------------------------LTQLIL-------
--------------------------------------------------------RH-P
------------------------------------------------------------
LAQTKI------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
---------------------------------------------------
>Macrococcus_caseolyticus_458233@BAH17775
------------------------------------------------------------
------------------------------------------------------------
-----------------------------MSQ-AKR------------------------
------------------------------------------------------------
------------------------------------------------------------
--------------------------------ILLI-----------------------L
------------------------------------------------------------
-----------------------IFSFI-----FGMIAF---------------------
-----F----------------------------------H-------------------
------E---------SR------------------------------------------
test/hmmsearch.out view on Meta::CPAN
Pelosinus_fermentans_1122947@EIW31336 - profile - 1.6e-90 296.5 13.6 1.8e-90 296.4 13.6 1.0 1 0 0 1 1 1 1 -
Bacillus_macauensis_1196324@EIT85841 - profile - 3.1e-81 266.2 6.1 3.9e-81 265.8 6.1 1.0 1 0 0 1 1 1 1 -
Sporosarcina_newyorkensis_1027292@EGQ24744 - profile - 1.1e-80 264.3 16.7 1.3e-80 264.1 16.7 1.0 1 0 0 1 1 1 1 -
Paenibacillus_polymyxa_886882@ADO56408 - profile - 3.5e-79 259.4 10.8 4.2e-79 259.2 10.8 1.0 1 0 0 1 1 1 1 -
Paenibacillus_sp._481743@ACX66507 - profile - 2.1e-77 253.6 9.6 2.6e-77 253.3 9.6 1.0 1 0 0 1 1 1 1 -
Desulfotomaculum_carboxydivorans_868595@AEF93225 - profile - 7.8e-75 245.2 8.0 8.5e-75 245.1 8.0 1.0 1 0 0 1 1 1 1 -
Paenibacillus_curdlanolyticus_717606@EFM13001 - profile - 2.7e-74 243.4 2.8 2.9e-74 243.3 2.8 1.0 1 0 0 1 1 1 1 -
Staphylococcus_aureus_282458@CAG40426 - profile - 5.2e-74 242.5 9.9 5.7e-74 242.4 9.9 1.0 1 0 0 1 1 1 1 -
Haloplasma_contractile_1033810@EGM25763 - profile - 3.5e-73 239.8 23.9 5.2e-73 239.2 23.9 1.2 1 1 0 1 1 1 1 -
Haloplasma_contractile_1033810@EGM29912 - profile - 3.5e-73 239.8 23.9 5.2e-73 239.2 23.9 1.2 1 1 0 1 1 1 1 -
Macrococcus_caseolyticus_458233@BAH17775 - profile - 7.7e-73 238.7 11.7 8.3e-73 238.6 11.7 1.0 1 0 0 1 1 1 1 -
Staphylococcus_massiliensis_1229783@EKU47500 - profile - 9.5e-73 238.4 12.9 1e-72 238.2 12.9 1.0 1 0 0 1 1 1 1 -
Staphylococcus_pettenkoferi_904314@EHM72354 - profile - 9.6e-72 235.1 16.4 1e-71 235.0 16.4 1.0 1 0 0 1 1 1 1 -
Carnobacterium_sp._208596@AEB29259 - profile - 2.5e-71 233.7 10.5 2.7e-71 233.6 10.5 1.0 1 0 0 1 1 1 1 -
Staphylococcus_pseudintermedius_984892@ADX76632 - profile - 7.2e-71 232.2 15.1 7.8e-71 232.1 15.1 1.0 1 0 0 1 1 1 1 -
Staphylococcus_simulans_883166@EKS25136 - profile - 7.4e-66 215.8 14.7 8e-66 215.7 14.7 1.0 1 0 0 1 1 1 1 -
Rivularia_sp._373994@AFY57759 - profile - 4.1e-63 206.8 8.9 5.2e-63 206.5 8.9 1.0 1 0 0 1 1 1 1 -
Synechocystis_sp._927677@ELR88413 - profile - 5.6e-60 196.6 6.4 6e-60 196.5 6.4 1.0 1 0 0 1 1 1 1 -
Kyrpidia_tusciae_562970@ADG04796 - profile - 1.2e-59 195.5 2.1 1.5e-59 195.2 2.1 1.0 1 0 0 1 1 1 1 -
Stanieria_cyanosphaera_111780@AFZ34417 - profile - 1.8e-59 194.9 12.9 2e-59 194.8 12.9 1.0 1 0 0 1 1 1 1 -
Gillisia_limnaea_865937@EHQ04246 - profile - 9.5e-59 192.6 14.6 1.2e-58 192.3 14.6 1.0 1 0 0 1 1 1 1 -
test/hmmsearch_dom-1.exp-fasta view on Meta::CPAN
AYRLFVVHLRTPLLTEIMEGFSGLASPVTVIVMLIVVAAFAPGPSVGRLASINLGGVVIV
DLIFKAIVQRPRPDGFRLVVETGYSFPSGHSMFSMAFYGLLIWLVWHYEKDKLQRWIWCG
LFSGIIIMIGVSRIYLGVHYATDVIGGFSLALVWLVLFTKLMIPSLIYKKKVPQAKTD
>Psychrobacter_cryohalolentis_335284@ABE75027
MITLIQKNQQLLLLGVFILLVVVVLWVLQSVIIRYGQKVLNQVPTCWTVLEQYFGKSKRL
TRLKNNYPKLYHASLQRLTVQHFYGLPLTVLFLVMGYILALFFGLVEDVVTSDTIVATDF
FVSQQMSMLSESPVVTFFIFITSFASTATTCLIVLLVCILCWVIRQPYILVGFLIATLGS
TIFTFLSKLLFHRTRPVDILLFEQTDSFPSGHATVTVALYGFLAYMAIRFSRNFATQVRI
AVITVFFSLLIGLSRILLNEHYLSDVLGGYLVGALWLTVAISVTEWLRTRDKIDWQISWS
VTQVRLVWLNIVCVLIGTSIYAEFYQLPLLI
>Macrococcus_caseolyticus_458233@BAH17775
MSQAKRILLILIFSFIFGMIAFFHESRIGKWIDNEVYEFIYSSESFITTTIMLGFTKIGE
VWSMILLSLLLVCYLLLKKLKIDALFFALSMILSGVLNPLLKNIFDRERPTLLRLIDITG
FSFPSGHAMGSCAFFGSLAILIKYHSNSSFKPYFIGMCVFTILMISSSRVYLGVHYPTDI
IAGVIGGAVCILLSQLILNKVIDNRSQ
>Listeria_monocytogenes_1639@CCQ21097
MKKTPFIISGIGLLGFIFFMTGVMTGAKWIQRFDHYWNSVIRVGITDTKTTVISYLTDIG
GVATICILTAIIIIVFVFMRKVDTAIWFGSIVLIGGALIPSIIKNIVQRPRPTYKLIEQG
GFSFPSGHSTGSTVFYGMLAFLLILYVSRRWLRFTIGILALGIVIFVMYSRVYLGVHFPS
DVVAGFLIGNAALFSGIGCYFIWNEKLAVWANKFKKA
>Hyphomonas_neptunium_228405@ABI75362
test/hmmsearch_dom-1.exp-idl view on Meta::CPAN
Haloplasma_contractile_1033810@EGM29912
Psychrobacter_sp._349106@ABQ94025
Lactobacillus_sp._872326@CCK84127
Staphylococcus_aureus_282458@CAG40426
Pediococcus_acidilactici_1306952@EOA08128
Bifidobacterium_gallicum_561180@EFA22864
Ktedonobacter_racemifer_485913@EFH90230
Bacillus_nealsonii_1202533@EOR24990
Atopobium_parvulum_521095@ACV51745
Psychrobacter_cryohalolentis_335284@ABE75027
Macrococcus_caseolyticus_458233@BAH17775
Listeria_monocytogenes_1639@CCQ21097
Hyphomonas_neptunium_228405@ABI75362
Bacillus_sp._666686@AGK52556
Scardovia_wiggsiae_857290@EJD64896
Aerococcus_urinae_866775@AEA01410
Solobacterium_moorei_706433@EFW24906
Brevibacillus_sp._1144311@EJL41297
Dolosigranulum_pigrum_883103@EHR35184
Truepera_radiovictrix_649638@ADI14034
Listeria_grayi_525367@EFI84470
test/hmmsearch_dom.fasta view on Meta::CPAN
AYRLFVVHLRTPLLTEIMEGFSGLASPVTVIVMLIVVAAFAPGPSVGRLASINLGGVVIV
DLIFKAIVQRPRPDGFRLVVETGYSFPSGHSMFSMAFYGLLIWLVWHYEKDKLQRWIWCG
LFSGIIIMIGVSRIYLGVHYATDVIGGFSLALVWLVLFTKLMIPSLIYKKKVPQAKTD
>Psychrobacter_cryohalolentis_335284@ABE75027
MITLIQKNQQLLLLGVFILLVVVVLWVLQSVIIRYGQKVLNQVPTCWTVLEQYFGKSKRL
TRLKNNYPKLYHASLQRLTVQHFYGLPLTVLFLVMGYILALFFGLVEDVVTSDTIVATDF
FVSQQMSMLSESPVVTFFIFITSFASTATTCLIVLLVCILCWVIRQPYILVGFLIATLGS
TIFTFLSKLLFHRTRPVDILLFEQTDSFPSGHATVTVALYGFLAYMAIRFSRNFATQVRI
AVITVFFSLLIGLSRILLNEHYLSDVLGGYLVGALWLTVAISVTEWLRTRDKIDWQISWS
VTQVRLVWLNIVCVLIGTSIYAEFYQLPLLI
>Macrococcus_caseolyticus_458233@BAH17775
MSQAKRILLILIFSFIFGMIAFFHESRIGKWIDNEVYEFIYSSESFITTTIMLGFTKIGE
VWSMILLSLLLVCYLLLKKLKIDALFFALSMILSGVLNPLLKNIFDRERPTLLRLIDITG
FSFPSGHAMGSCAFFGSLAILIKYHSNSSFKPYFIGMCVFTILMISSSRVYLGVHYPTDI
IAGVIGGAVCILLSQLILNKVIDNRSQ
>Listeria_monocytogenes_1639@CCQ21097
MKKTPFIISGIGLLGFIFFMTGVMTGAKWIQRFDHYWNSVIRVGITDTKTTVISYLTDIG
GVATICILTAIIIIVFVFMRKVDTAIWFGSIVLIGGALIPSIIKNIVQRPRPTYKLIEQG
GFSFPSGHSTGSTVFYGMLAFLLILYVSRRWLRFTIGILALGIVIFVMYSRVYLGVHFPS
DVVAGFLIGNAALFSGIGCYFIWNEKLAVWANKFKKA
>Hyphomonas_neptunium_228405@ABI75362
test/hmmsearch_dom.out view on Meta::CPAN
Haloplasma_contractile_1033810@EGM29912 - 239 database - 213 2.2e-51 168.5 23.7 1 1 4.8e-51 4.8e-51 167.4 23.7 10 204 21 232 2 239 0.80 -
Psychrobacter_sp._349106@ABQ94025 - 331 database - 213 2.6e-51 168.2 24.0 1 1 4.9e-51 4.9e-51 167.3 23.4 11 204 91 290 13 306 0.85 -
Lactobacillus_sp._872326@CCK84127 - 221 database - 213 3.6e-51 167.8 4.7 1 1 4.1e-51 4.1e-51 167.6 4.7 15 209 20 215 2 221 0.82 -
Staphylococcus_aureus_282458@CAG40426 - 204 database - 213 3.8e-51 167.7 9.8 1 1 4.5e-51 4.5e-51 167.5 9.8 14 202 9 197 1 202 0.86 -
Pediococcus_acidilactici_1306952@EOA08128 - 211 database - 213 3.8e-51 167.7 12.2 1 1 4.5e-51 4.5e-51 167.5 12.2 16 207 16 205 2 211 0.86 -
Bifidobacterium_gallicum_561180@EFA22864 - 232 database - 213 4.1e-51 167.6 16.4 1 1 4.6e-51 4.6e-51 167.4 16.4 11 204 26 220 1 229 0.81 -
Ktedonobacter_racemifer_485913@EFH90230 - 294 database - 213 4.3e-51 167.5 1.8 1 1 5.1e-51 5.1e-51 167.3 1.8 11 203 66 258 23 282 0.81 -
Bacillus_nealsonii_1202533@EOR24990 - 219 database - 213 4.6e-51 167.4 3.5 1 1 5.6e-51 5.6e-51 167.1 3.5 12 210 10 211 3 217 0.87 -
Atopobium_parvulum_521095@ACV51745 - 238 database - 213 4.7e-51 167.4 10.7 1 1 5.8e-51 5.8e-51 167.1 10.7 13 208 33 231 5 236 0.83 -
Psychrobacter_cryohalolentis_335284@ABE75027 - 331 database - 213 5.3e-51 167.2 22.7 1 1 5.3e-51 5.3e-51 167.2 22.7 10 207 90 289 55 305 0.88 -
Macrococcus_caseolyticus_458233@BAH17775 - 207 database - 213 6.5e-51 166.9 10.0 1 1 6.9e-51 6.9e-51 166.9 10.0 11 202 8 197 1 207 0.84 -
Listeria_monocytogenes_1639@CCQ21097 - 217 database - 213 7.3e-51 166.8 14.4 1 1 9.2e-51 9.2e-51 166.4 14.4 13 203 7 200 2 216 0.85 -
Hyphomonas_neptunium_228405@ABI75362 - 230 database - 213 8.9e-51 166.5 8.5 1 1 1.1e-50 1.1e-50 166.2 8.5 11 202 23 223 6 228 0.87 -
Bacillus_sp._666686@AGK52556 - 225 database - 213 1.2e-50 166.0 15.6 1 1 1.4e-50 1.4e-50 165.8 15.6 10 203 23 216 4 225 0.86 -
Scardovia_wiggsiae_857290@EJD64896 - 326 database - 213 1.3e-50 166.0 13.4 1 1 1.6e-50 1.6e-50 165.7 13.4 14 204 30 228 5 259 0.83 -
Aerococcus_urinae_866775@AEA01410 - 295 database - 213 1.7e-50 165.6 3.8 1 1 2.1e-50 2.1e-50 165.2 3.8 16 204 16 221 5 244 0.83 -
Solobacterium_moorei_706433@EFW24906 - 209 database - 213 2.7e-50 164.9 16.8 1 1 3.2e-50 3.2e-50 164.7 16.8 10 202 9 200 1 208 0.84 -
Brevibacillus_sp._1144311@EJL41297 - 222 database - 213 3.4e-50 164.6 9.2 1 1 4.4e-50 4.4e-50 164.2 9.2 14 203 15 204 3 215 0.85 -
Dolosigranulum_pigrum_883103@EHR35184 - 218 database - 213 4e-50 164.3 15.8 1 1 4.2e-50 4.2e-50 164.3 15.8 12 203 19 212 1 218 0.86 -
Truepera_radiovictrix_649638@ADI14034 - 279 database - 213 4.4e-50 164.2 8.4 1 1 5.6e-50 5.6e-50 163.9 8.4 10 209 15 215 3 237 0.86 -
Listeria_grayi_525367@EFI84470 - 232 database - 213 4.8e-50 164.1 19.1 1 1 5.4e-50 5.4e-50 163.9 19.1 6 204 6 215 1 229 0.85 -
( run in 0.714 second using v1.01-cache-2.11-cpan-49f99fa48dc )