Bio-MUST-Apps-HmmCleaner

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test/GNTPAN12210.ali  view on Meta::CPAN

>Homo sapiens@ENSP00000456712
MAE********PSQAPTPAPAAQPRPLQSPAPAPTPTPAPSPASAPIPTPTPAPAPAPAAAPAGSTGTGGPGVGSGGAG*******SGGDPARPGLSQQQ**RASQRKAQVRGLPRAKKLEKLGVFSACKANETCKCNGWKNPK*****P*PTAPRMDLQQPAANLSELCRSCEHPLA*DHVSH*LENVSEDEINRLLGMVVDVENLFMSV***HKEEDTDTKQVY*FYLFKLLRKCILQMTRPVVEGSL...
>L oxodonta_africana@ENSLAFP00000006713_that is really long with strange stuff
***********PSQAPTPAPAAQPRPLQ***********************************GSTGTGGPGVGSGGTG*******SGGDPARPGLSQQQ**RASQRKAQVRGLPRAKKLEKLGVFSACKANETCKCNGWKNPK*****P*PTAPRMDLQQPAANLSELCRSCEHPLA*DHVSH*LENVSEDEINRLLGMVVDVENLFMSV***HKEEDTDTKQVY*FYLFKLLRKCILQMTRPVVEGSL...
>Canis familiaris@ENSCAFP00000023075
MAE********PSQASTPAPATQPRPLQSPAPAPPPTPAPSPASAPTPAPTPAPAPAPVAAPAGSTGTGGPGVGSGGTG*******SGGDPARPGLSQQQ**RASQRKAQVRGLPRAKKLEKLGVFSACKANETCKCNGWKNPK*****P*PTAPRMDLQQPAANLSELCRSCEHPLA*DHVSH*LENVSEDEINRLLGMVVDVENLFMSV***HKEEDTDTKQVY*FYLFKLLRKCILQMTRPVVEGSL...
>Mus musculus@ENSMUSP00000098017
MAE********PSQAPNPVPAAQPRPLHSPAPAPTSTPAPSPASASTPAPTPAPAPAPAAAPAGSTGSGGAGVG************SGGDPARPGLSQQQ**RASQRKAQVRGLPRAKKLEKLGVFSACKANETCKCNGWKNPK*****P*PTAPRMDLQQPAANLSELCRSCEHPLA*DHVSH*LENVSEDEINRLLGMVVDVENLFMSV***HKEEDTDTKQVY*FYLFK******************...
>Monodelphis domestica@ENSMODP00000018493
***************************************************************GAPGSGTPGVGSGAPG*******AGGDPARPGLSQQQ**RASQRKAQVRALPRAKKLEKLGVFSACKANDACKCNGWKNPK*****P*PTAPRMDLQQPAANLSEACRSCEHPLA*DHVSH*LENVSEDEINRLLGMVVDVENLFMSV***HKEEDTDTKQVY*FYLFKLLRKCILQMTRPVVEGSL...
>Macropus eugenii@ENSMEUP00000005117
MAE********PPQAQAQVPTQT**QAQAQAPVPEPAPAPAPAPAPVPAPTP***PGPAAAPAGAPGSGTPGAGSAAPG*******AGGDPARPGLSQQQ**RASQRKAQVRALPRAKKLEKLGVFSACKANDACKCNGWKNPK*****P*PTAPRMDLQQPAANLSEACRSCEHPLA*DHVSH*LENVSEDEINRLLGMVVDVENLFMSV***HKEEDTDTKQVY*FYLFKLLRKCILQMTRPVVEGSL...
>Ornithorhynchus anatinus@ENSOANP00000015773
*********************************************************************************************************************************************************************************A*DHVSH*LENVSEDEISRLLGMVVDVENLFMSV***HKEEDTDPKQVY*FL*********************...
>Xenopus tropicalis@ENSXETP00000004923
LIEAPEGLSPAEEGRNVPIQLTGSPAITQATEGSSEGIKEPETPNPNPRASPSGLEAPAA******GHTATGTGGGSSS*******STSDPARPGLSQQQ**RASQRKAQVRALPRAKKLEKLGVFSACKANDLCKCNGWKNPN*****P*QTAPRMDLQQPAASLTEPCRSCGHALA*NHVSH*LENVSEDEINRLLGMVVDVENLFMSV***HKEEDTDTKQVY*FYLFKLLRKCILQMIRPVVEGSL...
>Meleagris gallopavo@ENSMGAP00000006789
**********************************************************************************************************************************************************************************************************************************************************...
>Gallus gallus@ENSGALP00000005317
*********************************************************************************************************************************QANDACKCNGWKNPN*****P*PTAPRMDLQQPVTNLSEPCRSCSHALA*DHVSH*LENVSEEEINRLLGMVVDVENLFMSV***HKEEDTDTKQVY*FYLFKLLRKCILQMSQPVVEGSL...
>Taeniopygia guttata@ENSTGUP00000002617

test/GNTPAN12210.ali  view on Meta::CPAN

>Mus musculus@ENSMUSP00000000724
*************************MAEAGGAG********************SPALPPAPPHGSPRTLATAAGSSASCGPATAVAAAGTAEGPGGGGSA**RIAVKKAQLRSAPRAKKLEKLGVYSACKAEESCKCNGWKNPN*****PSPTPPRGDLQQIIVSLTESCRSCSHALA*AHVSH*LENVSEEEMDRLLGIVLDVEYLFTCV***HKEEDADTKQVY*FYLFKLLRKSILQRGKPVVEGSL...
>Canis familiaris@ENSCAFP00000008685
*********************************************************************************************************************************QAEESCKCNGWKNPN*****PSPTPPRADLQQIIVSLTESCRSCSHALVLLHVEHSQENFLVHFLKLLFGIVTNVQTLSVCVCQKLKAKDFDIKFIFRFFFLQLLRKSILQRGKPVVEGSL...
>Loxodonta africana@ENSLAFP00000005288
**********************************************************************************************************EEGAARAPLRWPELEKLGVYSACKAEESCKCNGWKNPN*****PSPTPPRADLQQIIVSLTESCRSCSHALA*AHVSH*LENVSEEEMNRLLGIVLDVEYLFTCV***HKEEDADTKQVY*FYLFKLLRKSILHRGKPVVEGSL...
>Dasypus novemcinctus@ENSDNOP00000011162
**********************************************************************************************************************************AEESCKCNGWKNPN*****PSPTPPRADLQHIIVSLTESCRSCSHALA*AHVSH*LENVSEEEMNRLLGIVLDVEYLFTCV***HKEEDADTKQVY*FYLFKXXXXXXXXXXXXXXXXXX...
>Monodelphis domestica@ENSMODP00000032522
***********************************************************************************************GASTA**RIAVKKAQLRSAPRAKKLEKLGVYSSCKAEESCKCNGWKNPN*****PPPTPPRADLQQIIVNLTESCRSCSHALA*AHVSH*LENVAEEEMNRLLGIVLDVEYLFTCV***HKEEDADTKQVY*FYLFKLLRKCILQMGKPVVEGSL...
>Macropus eugenii@ENSMEUP00000013271
**********************************************************************************************************************************AEESCKCNGWKNPN*****PPPTPPRADVQQIIVSLTESCRSCSHALA*AHVSH*LENVSEEEMNRLLGIVLDVEYLFTCV***HKEEDADTKQVY*FYLFKLLRKCILQMGKPIVEGSL...
>Ornithorhynchus anatinus@ENSOANP00000007907
*********************************************************************************************************************************QAEESCKCNGWKNPN*****PPPTPPRADLQQTIVNLTESCRSCSHALA*AHVSH*LENESEEEMNRLLGIVLDVEYLFTCV***HKEEDADTKQVY*FYLFKLLRKCILQMGKPVVEGSL...
>Anolis carolinensis@ENSACAP00000000014
**********************************************************************************************************************************************************************************************************************************************************...
>Meleagris gallopavo@ENSMGAP00000011451
**********************************************************************************************************************************************************************************************************************************************************...
>Gallus gallus@ENSGALP00000018380
*********************************************************************************************************************************QAEESCKCNGWKNPN*****PPPTPPRADLQQAVVSLTEPCRSCSHTLA*AHVSH*LENVSEEEMNRLLGIVLDVEYLFTCV***HKEEDADTKQVY*FYLFKLLRKCILQMGKPVIEGSL...
>Meleagris gallopavo@ENSMGAP00000011414

test/GNTPAN12210_hmm.ali  view on Meta::CPAN

>Homo sapiens@ENSP00000456712
                                                                                       GGDPARPGLSQQQ**RASQRKAQVRGLPRAKKLEKLGVFSACKANETCKCNGWKNPK*****P*PTAPRMDLQQPAANLSELCRSCEHPLA*DHVSH*LENVSEDEINRLLGMVVDVENLFMSV***HKEEDTDTKQVY*FYLFKLLRKCILQMTRPVVEGSL...
>L oxodonta_africana@ENSLAFP00000006713_that is really long with strange stuff
                                                                                       GGDPARPGLSQQQ**RASQRKAQVRGLPRAKKLEKLGVFSACKANETCKCNGWKNPK*****P*PTAPRMDLQQPAANLSELCRSCEHPLA*DHVSH*LENVSEDEINRLLGMVVDVENLFMSV***HKEEDTDTKQVY*FYLFKLLRKCILQMTRPVVEGSL...
>Canis familiaris@ENSCAFP00000023075
                                                                                       GGDPARPGLSQQQ**RASQRKAQVRGLPRAKKLEKLGVFSACKANETCKCNGWKNPK*****P*PTAPRMDLQQPAANLSELCRSCEHPLA*DHVSH*LENVSEDEINRLLGMVVDVENLFMSV***HKEEDTDTKQVY*FYLFKLLRKCILQMTRPVVEGSL...
>Mus musculus@ENSMUSP00000098017
                                                                  GSGGAGVG************SGGDPARPGLSQQQ**RASQRKAQVRGLPRAKKLEKLGVFSACKANETCKCNGWKNPK*****P*PTAPRMDLQQPAANLSELCRSCEHPLA*DHVSH*LENVSEDEINRLLGMVVDVENLFMSV***HKEEDTDTKQVY*FYLFK******************...
>Monodelphis domestica@ENSMODP00000018493
***************************************************************GAPGSGTPGVGSGAPG*******AGGDPARPGLSQQQ**RASQRKAQVRALPRAKKLEKLGVFSACKANDACKCNGWKNPK*****P*PTAPRMDLQQPAANLSEACRSCEHPLA*DHVSH*LENVSEDEINRLLGMVVDVENLFMSV***HKEEDTDTKQVY*FYLFKLLRKCILQMTRPVVEGSL...
>Macropus eugenii@ENSMEUP00000005117
                                                                                      AGGDPARPGLSQQQ**RASQRKAQVRALPRAKKLEKLGVFSACKANDACKCNGWKNPK*****P*PTAPRMDLQQPAANLSEACRSCEHPLA*DHVSH*LENVSEDEINRLLGMVVDVENLFMSV***HKEEDTDTKQVY*FYLFKLLRKCILQMTRPVVEGSL...
>Ornithorhynchus anatinus@ENSOANP00000015773
*********************************************************************************************************************************************************************************A*DHVSH*LENVSEDEISRLLGMVVDVENLFMSV***HKEEDTDPKQVY*FL*********************...
>Xenopus tropicalis@ENSXETP00000004923
                                                                                         DPARPGLSQQQ**RASQRKAQVRALPRAKKLEKLGVFSACKANDLCKCNGWKNPN*****P*QTAPRMDLQQPAASLTEPCRSCGHALA*NHVSH*LENVSEDEINRLLGMVVDVENLFMSV***HKEEDTDTKQVY*FYLFKLLRKCILQMIRPVVEGSL...
>Meleagris gallopavo@ENSMGAP00000006789
**********************************************************************************************************************************************************************************************************************************************************...
>Gallus gallus@ENSGALP00000005317
*********************************************************************************************************************************QANDACKCNGWKNPN*****P*PTAPRMDLQQPVTNLSEPCRSCSHALA*DHVSH*LENVSEEEINRLLGMVVDVENLFMSV***HKEEDTDTKQVY*FYLFKLLRKCILQMSQPVVEGSL...
>Taeniopygia guttata@ENSTGUP00000002617

test/GNTPAN12210_hmm.ali  view on Meta::CPAN

>Mus musculus@ENSMUSP00000000724
                                                                                                           KAQLRSAPRAKKLEKLGVYSACKAEESCKCNGWKNPN*****PSPTPPRGDLQQIIVSLTESCRSCSHALA*AHVSH*LENVSEEEMDRLLGIVLDVEYLFTCV***HKEEDADTKQVY*FYLFKLLRKSILQRGKPVVEGSL...
>Canis familiaris@ENSCAFP00000008685
*********************************************************************************************************************************QAEESCKCNGWKNPN*****PSPTPPRADLQQIIVSLTESCRSCSHAL                                                       LLRKSILQRGKPVVEGSL...
>Loxodonta africana@ENSLAFP00000005288
**********************************************************************************************************EEGAARAPLRWPELEKLGVYSACKAEESCKCNGWKNPN*****PSPTPPRADLQQIIVSLTESCRSCSHALA*AHVSH*LENVSEEEMNRLLGIVLDVEYLFTCV***HKEEDADTKQVY*FYLFKLLRKSILHRGKPVVEGSL...
>Dasypus novemcinctus@ENSDNOP00000011162
**********************************************************************************************************************************AEESCKCNGWKNPN*****PSPTPPRADLQHIIVSLTESCRSCSHALA*AHVSH*LENVSEEEMNRLLGIVLDVEYLFTCV***HKEEDADTKQVY*FYLFKXXXXXXXXXXXXXXXXXX...
>Monodelphis domestica@ENSMODP00000032522
***********************************************************************************************GASTA**RIAVKKAQLRSAPRAKKLEKLGVYSSCKAEESCKCNGWKNPN*****PPPTPPRADLQQIIVNLTESCRSCSHALA*AHVSH*LENVAEEEMNRLLGIVLDVEYLFTCV***HKEEDADTKQVY*FYLFKLLRKCILQMGKPVVEGSL...
>Macropus eugenii@ENSMEUP00000013271
**********************************************************************************************************************************AEESCKCNGWKNPN*****PPPTPPRADVQQIIVSLTESCRSCSHALA*AHVSH*LENVSEEEMNRLLGIVLDVEYLFTCV***HKEEDADTKQVY*FYLFKLLRKCILQMGKPIVEGSL...
>Ornithorhynchus anatinus@ENSOANP00000007907
*********************************************************************************************************************************QAEESCKCNGWKNPN*****PPPTPPRADLQQTIVNLTESCRSCSHALA*AHVSH*LENESEEEMNRLLGIVLDVEYLFTCV***HKEEDADTKQVY*FYLFKLLRKCILQMGKPVVEGSL...
>Anolis carolinensis@ENSACAP00000000014
**********************************************************************************************************************************************************************************************************************************************************...
>Meleagris gallopavo@ENSMGAP00000011451
**********************************************************************************************************************************************************************************************************************************************************...
>Gallus gallus@ENSGALP00000018380
*********************************************************************************************************************************QAEESCKCNGWKNPN*****PPPTPPRADLQQAVVSLTEPCRSCSHTLA*AHVSH*LENVSEEEMNRLLGIVLDVEYLFTCV***HKEEDADTKQVY*FYLFKLLRKCILQMGKPVIEGSL...
>Meleagris gallopavo@ENSMGAP00000011414

test/GNTPAN12210_hmm.log  view on Meta::CPAN

	1-87
L oxodonta_africana@ENSLAFP00000006713_that is really long with strange stuff
	12-87
Canis familiaris@ENSCAFP00000023075
	1-87
Mus musculus@ENSMUSP00000098017
	1-66
	499-529
Monodelphis domestica@ENSMODP00000018493
	621-692
Macropus eugenii@ENSMEUP00000005117
	1-86
Ornithorhynchus anatinus@ENSOANP00000015773
	336-349
	460-529
Xenopus tropicalis@ENSXETP00000004923
	1-89
Meleagris gallopavo@ENSMGAP00000006789
	451-528
Gallus gallus@ENSGALP00000005317
	270-305

test/GNTPAN12210_hmm.log  view on Meta::CPAN

Mus musculus@ENSMUSP00000000724
	26-107
	412-451
Canis familiaris@ENSCAFP00000008685
	178-232
	412-433
Loxodonta africana@ENSLAFP00000005288
Dasypus novemcinctus@ENSDNOP00000011162
	412-450
Monodelphis domestica@ENSMODP00000032522
Macropus eugenii@ENSMEUP00000013271
Ornithorhynchus anatinus@ENSOANP00000007907
Anolis carolinensis@ENSACAP00000000014
	425-446
Meleagris gallopavo@ENSMGAP00000011451
Gallus gallus@ENSGALP00000018380
Meleagris gallopavo@ENSMGAP00000011414
Taeniopygia guttata@ENSTGUP00000003370
	425-446
Xenopus tropicalis@ENSXETP00000030583
	26-109

test/GNTPAN12210_hmm.score  view on Meta::CPAN

                                   	                                                                        GGDPARPGLSQQQRASQRKAQVRGLPRAKKLEKLGVFSACKANETCKCNGWKNPKPPTAPRMDLQQPAANLSELCRSCEHPLADHVSHLENVSEDEINRLLGMVVDVENLFMSVHKEEDTDTKQVYFYLFKLLRKCILQMTR...

Mus musculus@ENSMUSP00000098017	MAEPSQAPNPVPAAQPRPLHSPAPAPTSTPAPSPASASTPAPTPAPAPAPAAAPAGSTGSGGAGVGSGGDPARPGLSQQQRASQRKAQVRGLPRAKKLEKLGVFSACKANETCKCNGWKNPKPPTAPRMDLQQPAANLSELCRSCEHPLADHVSHLENVSEDEINRLLGMVVDVENLFMSVHKEEDTDTKQVYFYLFKGVLNFVQYKFSHLAPRERQT...
                               	                                                         +gsg+ag+g+ggdparpglsqqqrasqrkaqvr+lprakkleklgvfsackane+ckcngwknp+pptaprmdlqqpaa+lse crsc+h+ladhvshlenvse+einrllgmvvdvenlfmsvhkeedtdtkqvyfylfkgvlnfvqykfshl+p+erqt...
                               	                                                          GSGGAGVGSGGDPARPGLSQQQRASQRKAQVRGLPRAKKLEKLGVFSACKANETCKCNGWKNPKPPTAPRMDLQQPAANLSELCRSCEHPLADHVSHLENVSEDEINRLLGMVVDVENLFMSVHKEEDTDTKQVYFYLFKGVLNFVQYKFSHLAPRERQT...

Monodelphis domestica@ENSMODP00000018493	GAPGSGTPGVGSGAPGAGGDPARPGLSQQQRASQRKAQVRALPRAKKLEKLGVFSACKANDACKCNGWKNPKPPTAPRMDLQQPAANLSEACRSCEHPLADHVSHLENVSEDEINRLLGMVVDVENLFMSVHKEEDTDTKQVYFYLFKLLRKCILQMTRPVVEGSLGSPPFEKPNIEQGVLNFVQFKFSHLAPRERQTMFELSKMFLLC...
                                        	    sg++g+g     aggdparpglsqqqrasqrkaqvralprakkleklgvfsackan++ckcngwknp+pptaprmdlqqpaa+lse crsc+h+ladhvshlenvse+einrllgmvvdvenlfmsvhkeedtdtkqvyfylfkllrkcilqm++pvvegslgsppfekpnieqgvlnfvq+kfshl+p+erqtm+elskmfllc...
                                        	GAPGSGTPGVGSGAPGAGGDPARPGLSQQQRASQRKAQVRALPRAKKLEKLGVFSACKANDACKCNGWKNPKPPTAPRMDLQQPAANLSEACRSCEHPLADHVSHLENVSEDEINRLLGMVVDVENLFMSVHKEEDTDTKQVYFYLFKLLRKCILQMTRPVVEGSLGSPPFEKPNIEQGVLNFVQFKFSHLAPRERQTMFELSKMFLLC...

Macropus eugenii@ENSMEUP00000005117	MAEPPQAQAQVPTQTQAQAQAPVPEPAPAPAPAPAPVPAPTPPGPAAAPAGAPGSGTPGAGSAAPGAGGDPARPGLSQQQRASQRKAQVRALPRAKKLEKLGVFSACKANDACKCNGWKNPKPPTAPRMDLQQPAANLSEACRSCEHPLADHVSHLENVSEDEINRLLGMVVDVENLFMSVHKEEDTDTKQVYFYLFKLLRKCILQMTRPVVEG...
                                   	                                                      sg++g+g     aggdparpglsqqqrasqrkaqvralprakkleklgvfsackan++ckcngwknp+pptaprmdlqqpaa+lse crsc+h+ladhvshlenvse+einrllgmvvdvenlfmsvhkeedtdtkqvyfylfkllrkcilqm++pvveg...
                                   	                                                                  AGGDPARPGLSQQQRASQRKAQVRALPRAKKLEKLGVFSACKANDACKCNGWKNPKPPTAPRMDLQQPAANLSEACRSCEHPLADHVSHLENVSEDEINRLLGMVVDVENLFMSVHKEEDTDTKQVYFYLFKLLRKCILQMTRPVVEG...

Ornithorhynchus anatinus@ENSOANP00000015773	ADHVSHLENVSEDEISRLLGMVVDVENLFMSVHKEEDTDPKQVYFLPVHGGVLNFVQYKFSHLAPKERQTMYELSKMFLLCLNYWKLETPAQFRQRSQAEDVAAYKVNYTRAQRGRGRPRGPGPRSGGRGLLKSIFTVTRRQLLEKFRVEKDKLVPEKRTLILTHFPKFLSMLEEEIYGENSPIWAAGFTLPAAEGTQLGPQPAAV...
                                           	adhvshlenvse+ei rllgmvvdvenlfmsvhkeedtd kqvyf pv+ gvlnfvqykfshl+pkerqtm+elskmfllclnywkletp+qfrqrsq +dva+ykvnytr q     pr       gr ll+siftvtrrqllekfrvekdkl+pekrtlilthfpkflsmleeeiygenspiw ++ft pa+egtqlg++pa v...
                                           	ADHVSHLENVSEDEISRLLGMVVDVENLFMSVHKEEDTDPKQVYFLPVHGGVLNFVQYKFSHLAPKERQTMYELSKMFLLCLNYWKLETPAQFRQRSQAEDVAAYKVNYTRAQ              GRGLLKSIFTVTRRQLLEKFRVEKDKLVPEKRTLILTHFPKFLSMLEEEIYGENSPIWAAGFTLPAAEGTQLGPQPAAV...

Xenopus tropicalis@ENSXETP00000004923	LIEAPEGLSPAEEGRNVPIQLTGSPAITQATEGSSEGIKEPETPNPNPRASPSGLEAPAAGHTATGTGGGSSSSTSDPARPGLSQQQRASQRKAQVRALPRAKKLEKLGVFSACKANDLCKCNGWKNPNPQTAPRMDLQQPAASLTEPCRSCGHALANHVSHLENVSEDEINRLLGMVVDVENLFMSVHKEEDTDTKQVYFYLFKLLRKCIL...
                                     	                                                                   g     + +dparpglsqqqrasqrkaqvralprakkleklgvfsackan+ ckcngwknpnp+taprmdlqqpaasl+epcrsc+hala+hvshlenvse+einrllgmvvdvenlfmsvhkeedtdtkqvyfylfkllrkcil...
                                     	                                                                            DPARPGLSQQQRASQRKAQVRALPRAKKLEKLGVFSACKANDLCKCNGWKNPNPQTAPRMDLQQPAASLTEPCRSCGHALANHVSHLENVSEDEINRLLGMVVDVENLFMSVHKEEDTDTKQVYFYLFKLLRKCIL...

test/GNTPAN12210_hmm.score  view on Meta::CPAN

                                     	EEGAARAPLRWPELEKLGVYSACKAEESCKCNGWKNPNPSPTPPRADLQQIIVSLTESCRSCSHALAAHVSHLENVSEEEMNRLLGIVLDVEYLFTCVHKEEDADTKQVYFYLFKLLRKSILHRGKPVVEGSLEKKPPFEKPSIEQGVNNFVQYKFSHLPSKERQTIVELAKMFLNRINYWHLEAPSQRRLRSPNDDISGYKENYTRWLCYC...

Dasypus novemcinctus@ENSDNOP00000011162	AEESCKCNGWKNPNPSPTPPRADLQHIIVSLTESCRSCSHALAAHVSHLENVSEEEMNRLLGIVLDVEYLFTCVHKEEDADTKQVYFYLFKGVNNFVQYKFSHLPSKERQTIVELAKMFLNRINYWHLEAPSQRRLHSPNDDISGYKENYTFLSMLEEEVYSQNSPIWDQDFLSASSRNSRLGIQTVINPPPVAGTISYNSNSTSLEQPN...
                                       	a+esckcngwknpnp pt+pr+dlq++++sl+e+crscshala+hvshlenvseee+nrllg+v+dve+lf++vhkeed+dtkqvyfylfkgv+nfvqykfshlp+kerqt+vel+kmfl+++nyw+le+psq+r++s+ndd++gyk+nytflsmleee+y++nspiw+qdf++++s+++ lgi     +p+v++t+s++s++ +leq+n...
                                       	AEESCKCNGWKNPNPSPTPPRADLQHIIVSLTESCRSCSHALAAHVSHLENVSEEEMNRLLGIVLDVEYLFTCVHKEEDADTKQVYFYLFKGVNNFVQYKFSHLPSKERQTIVELAKMFLNRINYWHLEAPSQRRLHSPNDDISGYKENYTFLSMLEEEVYSQNSPIWDQDF                                 LEQPN...

Monodelphis domestica@ENSMODP00000032522	GASTARIAVKKAQLRSAPRAKKLEKLGVYSSCKAEESCKCNGWKNPNPPPTPPRADLQQIIVNLTESCRSCSHALAAHVSHLENVAEEEMNRLLGIVLDVEYLFTCVHKEEDADTKQVYFYLFKLLRKCILQMGKPVVEGSLESPPFEKPSIEQGVNNFVQYKFSHLPSKERQTIVELAKMFLNRINYWHLETPSQRRQRSPNDDVAGY...
                                        	    +r++++kaq+r++prakkleklgv+s+cka+esckcngwknpnp pt+pr+dlqq++++l+e+crscshala+hvshlenv eee+nrllg+v+dve+lf++vhkeed+dtkqvyfylfkllrkcilqmgkpvvegsl+sppfekp+ieqgv+nfvqykfshlp+kerqt+vel+kmfl+++nyw+letpsq+rqrs+nddvagy...
                                        	GASTARIAVKKAQLRSAPRAKKLEKLGVYSSCKAEESCKCNGWKNPNPPPTPPRADLQQIIVNLTESCRSCSHALAAHVSHLENVAEEEMNRLLGIVLDVEYLFTCVHKEEDADTKQVYFYLFKLLRKCILQMGKPVVEGSLESPPFEKPSIEQGVNNFVQYKFSHLPSKERQTIVELAKMFLNRINYWHLETPSQRRQRSPNDDVAGY...

Macropus eugenii@ENSMEUP00000013271	AEESCKCNGWKNPNPPPTPPRADVQQIIVSLTESCRSCSHALAAHVSHLENVSEEEMNRLLGIVLDVEYLFTCVHKEEDADTKQVYFYLFKLLRKCILQMGKPIVEGSLESPPFEKPSIEQGVNNFVHYKFSHLPSKERQTIVELAKMFLNRINYWHLETPSQRRLRSPNDDVAGYKVNYTRWLCYCHVPQFCDSLTRYETTQVFGRTLLRSVF...
                                   	a+esckcngwknpnp pt+pr+d qq+++sl+e+crscshala+hvshlenvseee+nrllg+v+dve+lf++vhkeed+dtkqvyfylfkllrkcilqmgkp vegsl+sppfekp+ieqgv+nfv+ykfshlp+kerqt+vel+kmfl+++nyw+letpsq+r+rs+nddvagykvnytrwlcychvpq+cdsl ryettqvfgrtllrs+f...
                                   	AEESCKCNGWKNPNPPPTPPRADVQQIIVSLTESCRSCSHALAAHVSHLENVSEEEMNRLLGIVLDVEYLFTCVHKEEDADTKQVYFYLFKLLRKCILQMGKPIVEGSLESPPFEKPSIEQGVNNFVHYKFSHLPSKERQTIVELAKMFLNRINYWHLETPSQRRLRSPNDDVAGYKVNYTRWLCYCHVPQFCDSLTRYETTQVFGRTLLRSVF...

Ornithorhynchus anatinus@ENSOANP00000007907	QAEESCKCNGWKNPNPPPTPPRADLQQTIVNLTESCRSCSHALAAHVSHLENESEEEMNRLLGIVLDVEYLFTCVHKEEDADTKQVYFYLFKLLRKCILQMGKPVVEGSLESPPFEKPSIEQGVNNFVQYKFSHLPSKERQTIVELAKMFLNRINYWHLETPSQRRLRSPNDDIAGYKVNYTRWLCYCNVPQFCDSLPRYETTQVF...
                                           	+a+esckcngwknpnp pt+pr+dlqq++++l+e+crscshala+hvshlen seee+nrllg+v+dve+lf++vhkeed+dtkqvyfylfkllrkcilqmgkpvvegsl+sppfekp+ieqgv+nfvqykfshlp+kerqt+vel+kmfl+++nyw+letpsq+r+rs+ndd+agykvnytrwlcyc+vpq+cdslpryettqvf...
                                           	QAEESCKCNGWKNPNPPPTPPRADLQQTIVNLTESCRSCSHALAAHVSHLENESEEEMNRLLGIVLDVEYLFTCVHKEEDADTKQVYFYLFKLLRKCILQMGKPVVEGSLESPPFEKPSIEQGVNNFVQYKFSHLPSKERQTIVELAKMFLNRINYWHLETPSQRRLRSPNDDIAGYKVNYTRWLCYCNVPQFCDSLPRYETTQVF...

Anolis carolinensis@ENSACAP00000000014	KPKLEKGVNNFVQYKFSHLPSKERQTIVELAKMFLNRINYWHLETPSQRRQRSPNDDIAGYKVNYTRWLCYCNVPQFCDSLPRYETTQVFGRTLLRSVFTVMRRQLLEHARQEKDKLPPEKRTLILTHFPKFLSMLEEEVYSQSSPIWDPDFIASSSRNAQLGIQTVISHPPVVRSAACNASPSSLEQSSGGNMSPACKAISGLDQNLGEK...
                                      	kp  e gv+nfvqykfshlp+kerqt+vel+kmfl+++nyw+letpsq+rqrs+ndd+agykvnytrwlcyc+vpq+cdslpryettqvfgrtllrs+ftv+rrqlle++r+ekdklppekrtlilthfpkflsmleee+y+++spiw++df  ++s+++qlgi     +p+vv+++++++sps+leq++gg++spack+ sgl++n gek...
                                      	KPKLEKGVNNFVQYKFSHLPSKERQTIVELAKMFLNRINYWHLETPSQRRQRSPNDDIAGYKVNYTRWLCYCNVPQFCDSLPRYETTQVFGRTLLRSVFTVMRRQLLEHARQEKDKLPPEKRTLILTHFPKFLSMLEEEVYSQSSPIWDPDFIASSSRNAQLGI                 SPSSLEQSSGGNMSPACKAISGLDQNLGEK...

test/GNTPAN12210_hmm_X.ali  view on Meta::CPAN

>Homo sapiens@ENSP00000456712
                                                                                       GGDPARPGLSQQQ**RASQRKAQVRGLPRAKKLEKLGVFSACKANETCKCNGWKNPK*****P*PTAPRMDLQQPAANLSELCRSCEHPLA*DHVSH*LENVSEDEINRLLGMVVDVENLFMSV***HKEEDTDTKQVY*FYLFKLLRKCILQMTRPVVEGSL...
>L oxodonta_africana@ENSLAFP00000006713_that is really long with strange stuff
                                                                                       GGDPARPGLSQQQ**RASQRKAQVRGLPRAKKLEKLGVFSACKANETCKCNGWKNPK*****P*PTAPRMDLQQPAANLSELCRSCEHPLA*DHVSH*LENVSEDEINRLLGMVVDVENLFMSV***HKEEDTDTKQVY*FYLFKLLRKCILQMTRPVVEGSL...
>Canis familiaris@ENSCAFP00000023075
                                                                                       GGDPARPGLSQQQ**RASQRKAQVRGLPRAKKLEKLGVFSACKANETCKCNGWKNPK*****P*PTAPRMDLQQPAANLSELCRSCEHPLA*DHVSH*LENVSEDEINRLLGMVVDVENLFMSV***HKEEDTDTKQVY*FYLFKLLRKCILQMTRPVVEGSL...
>Mus musculus@ENSMUSP00000098017
                                                                  GSGGAGVG************SGGDPARPGLSQQQ**RASQRKAQVRGLPRAKKLEKLGVFSACKANETCKCNGWKNPK*****P*PTAPRMDLQQPAANLSELCRSCEHPLA*DHVSH*LENVSEDEINRLLGMVVDVENLFMSV***HKEEDTDTKQVY*FYLFK******************...
>Monodelphis domestica@ENSMODP00000018493
***************************************************************GAPGSGTPGVGSGAPG*******AGGDPARPGLSQQQ**RASQRKAQVRALPRAKKLEKLGVFSACKANDACKCNGWKNPK*****P*PTAPRMDLQQPAANLSEACRSCEHPLA*DHVSH*LENVSEDEINRLLGMVVDVENLFMSV***HKEEDTDTKQVY*FYLFKLLRKCILQMTRPVVEGSL...
>Macropus eugenii@ENSMEUP00000005117
                                                                                      AGGDPARPGLSQQQ**RASQRKAQVRALPRAKKLEKLGVFSACKANDACKCNGWKNPK*****P*PTAPRMDLQQPAANLSEACRSCEHPLA*DHVSH*LENVSEDEINRLLGMVVDVENLFMSV***HKEEDTDTKQVY*FYLFKLLRKCILQMTRPVVEGSL...
>Ornithorhynchus anatinus@ENSOANP00000015773
*********************************************************************************************************************************************************************************A*DHVSH*LENVSEDEISRLLGMVVDVENLFMSV***HKEEDTDPKQVY*FL*********************...
>Xenopus tropicalis@ENSXETP00000004923
                                                                                         DPARPGLSQQQ**RASQRKAQVRALPRAKKLEKLGVFSACKANDLCKCNGWKNPN*****P*QTAPRMDLQQPAASLTEPCRSCGHALA*NHVSH*LENVSEDEINRLLGMVVDVENLFMSV***HKEEDTDTKQVY*FYLFKLLRKCILQMIRPVVEGSL...
>Meleagris gallopavo@ENSMGAP00000006789
**********************************************************************************************************************************************************************************************************************************************************...
>Gallus gallus@ENSGALP00000005317
*********************************************************************************************************************************QANDACKCNGWKNPN*****P*PTAPRMDLQQPVTNLSEPCRSCSHALA*DHVSH*LENVSEEEINRLLGMVVDVENLFMSV***HKEEDTDTKQVY*FYLFKLLRKCILQMSQPVVEGSL...
>Taeniopygia guttata@ENSTGUP00000002617

test/GNTPAN12210_hmm_X.ali  view on Meta::CPAN

>Mus musculus@ENSMUSP00000000724
                                                                                                           KAQLRSAPRAKKLEKLGVYSACKAEESCKCNGWKNPN*****PSPTPPRGDLQQIIVSLTESCRSCSHALA*AHVSH*LENVSEEEMDRLLGIVLDVEYLFTCV***HKEEDADTKQVY*FYLFKLLRKSILQRGKPVVEGSL...
>Canis familiaris@ENSCAFP00000008685
*********************************************************************************************************************************QAEESCKCNGWKNPN*****PSPTPPRADLQQIIVSLTESCRSCSHAL                                                       LLRKSILQRGKPVVEGSL...
>Loxodonta africana@ENSLAFP00000005288
**********************************************************************************************************EEGAARAPLRWPELEKLGVYSACKAEESCKCNGWKNPN*****PSPTPPRADLQQIIVSLTESCRSCSHALA*AHVSH*LENVSEEEMNRLLGIVLDVEYLFTCV***HKEEDADTKQVY*FYLFKLLRKSILHRGKPVVEGSL...
>Dasypus novemcinctus@ENSDNOP00000011162
**********************************************************************************************************************************AEESCKCNGWKNPN*****PSPTPPRADLQHIIVSLTESCRSCSHALA*AHVSH*LENVSEEEMNRLLGIVLDVEYLFTCV***HKEEDADTKQVY*FYLFK                  ...
>Monodelphis domestica@ENSMODP00000032522
***********************************************************************************************GASTA**RIAVKKAQLRSAPRAKKLEKLGVYSSCKAEESCKCNGWKNPN*****PPPTPPRADLQQIIVNLTESCRSCSHALA*AHVSH*LENVAEEEMNRLLGIVLDVEYLFTCV***HKEEDADTKQVY*FYLFKLLRKCILQMGKPVVEGSL...
>Macropus eugenii@ENSMEUP00000013271
**********************************************************************************************************************************AEESCKCNGWKNPN*****PPPTPPRADVQQIIVSLTESCRSCSHALA*AHVSH*LENVSEEEMNRLLGIVLDVEYLFTCV***HKEEDADTKQVY*FYLFKLLRKCILQMGKPIVEGSL...
>Ornithorhynchus anatinus@ENSOANP00000007907
*********************************************************************************************************************************QAEESCKCNGWKNPN*****PPPTPPRADLQQTIVNLTESCRSCSHALA*AHVSH*LENESEEEMNRLLGIVLDVEYLFTCV***HKEEDADTKQVY*FYLFKLLRKCILQMGKPVVEGSL...
>Anolis carolinensis@ENSACAP00000000014
**********************************************************************************************************************************************************************************************************************************************************...
>Meleagris gallopavo@ENSMGAP00000011451
**********************************************************************************************************************************************************************************************************************************************************...
>Gallus gallus@ENSGALP00000018380
*********************************************************************************************************************************QAEESCKCNGWKNPN*****PPPTPPRADLQQAVVSLTEPCRSCSHTLA*AHVSH*LENVSEEEMNRLLGIVLDVEYLFTCV***HKEEDADTKQVY*FYLFKLLRKCILQMGKPVIEGSL...
>Meleagris gallopavo@ENSMGAP00000011414

test/GNTPAN12210_hmm_X.log  view on Meta::CPAN

	1-87
L oxodonta_africana@ENSLAFP00000006713_that is really long with strange stuff
	12-87
Canis familiaris@ENSCAFP00000023075
	1-87
Mus musculus@ENSMUSP00000098017
	1-66
	499-529
Monodelphis domestica@ENSMODP00000018493
	621-692
Macropus eugenii@ENSMEUP00000005117
	1-86
	647-692
Ornithorhynchus anatinus@ENSOANP00000015773
	336-349
	460-529
Xenopus tropicalis@ENSXETP00000004923
	1-89
Meleagris gallopavo@ENSMGAP00000006789
	451-528
Gallus gallus@ENSGALP00000005317

test/GNTPAN12210_hmm_X.log  view on Meta::CPAN

	178-232
	412-433
Loxodonta africana@ENSLAFP00000005288
Dasypus novemcinctus@ENSDNOP00000011162
	233-265
	326-390
	412-450
	587-646
	856-891
Monodelphis domestica@ENSMODP00000032522
Macropus eugenii@ENSMEUP00000013271
	390-433
	577-646
	710-934
Ornithorhynchus anatinus@ENSOANP00000007907
Anolis carolinensis@ENSACAP00000000014
	425-446
Meleagris gallopavo@ENSMGAP00000011451
Gallus gallus@ENSGALP00000018380
Meleagris gallopavo@ENSMGAP00000011414
Taeniopygia guttata@ENSTGUP00000003370

test/GNTPAN12210_hmm_X.score  view on Meta::CPAN

                                   	                                                                        GGDPARPGLSQQQRASQRKAQVRGLPRAKKLEKLGVFSACKANETCKCNGWKNPKPPTAPRMDLQQPAANLSELCRSCEHPLADHVSHLENVSEDEINRLLGMVVDVENLFMSVHKEEDTDTKQVYFYLFKLLRKCILQMTR...

Mus musculus@ENSMUSP00000098017	MAEPSQAPNPVPAAQPRPLHSPAPAPTSTPAPSPASASTPAPTPAPAPAPAAAPAGSTGSGGAGVGSGGDPARPGLSQQQRASQRKAQVRGLPRAKKLEKLGVFSACKANETCKCNGWKNPKPPTAPRMDLQQPAANLSELCRSCEHPLADHVSHLENVSEDEINRLLGMVVDVENLFMSVHKEEDTDTKQVYFYLFKGVLNFVQYKFSHLAPRERQT...
                               	                                                         +gsg+ag+g+ggdparpglsqqqrasqrkaqvr+lprakkleklgvfsackane+ckcngwknp+pptaprmdlqqpaa+lse crsc+h+ladhvshlenvse+einrllgmvvdvenlfmsvhkeedtdtkqvyfylfkgvlnfvqykfshl+p+erqt...
                               	                                                          GSGGAGVGSGGDPARPGLSQQQRASQRKAQVRGLPRAKKLEKLGVFSACKANETCKCNGWKNPKPPTAPRMDLQQPAANLSELCRSCEHPLADHVSHLENVSEDEINRLLGMVVDVENLFMSVHKEEDTDTKQVYFYLFKGVLNFVQYKFSHLAPRERQT...

Monodelphis domestica@ENSMODP00000018493	GAPGSGTPGVGSGAPGAGGDPARPGLSQQQRASQRKAQVRALPRAKKLEKLGVFSACKANDACKCNGWKNPKPPTAPRMDLQQPAANLSEACRSCEHPLADHVSHLENVSEDEINRLLGMVVDVENLFMSVHKEEDTDTKQVYFYLFKLLRKCILQMTRPVVEGSLGSPPFEKPNIEQGVLNFVQFKFSHLAPRERQTMFELSKMFLLC...
                                        	    sg++g+g     aggdparpglsqqqrasqrkaqvralprakkleklgvfsackan++ckcngwknp+pptaprmdlqqpaa+lse crsc+h+ladhvshlenvse+einrllgmvvdvenlfmsvhkeedtdtkqvyfylfkllrkcilqm++pvvegslgsppfekpnieqgvlnfvq+kfshl+p+erqtm+elskmfllc...
                                        	GAPGSGTPGVGSGAPGAGGDPARPGLSQQQRASQRKAQVRALPRAKKLEKLGVFSACKANDACKCNGWKNPKPPTAPRMDLQQPAANLSEACRSCEHPLADHVSHLENVSEDEINRLLGMVVDVENLFMSVHKEEDTDTKQVYFYLFKLLRKCILQMTRPVVEGSLGSPPFEKPNIEQGVLNFVQFKFSHLAPRERQTMFELSKMFLLC...

Macropus eugenii@ENSMEUP00000005117	MAEPPQAQAQVPTQTQAQAQAPVPEPAPAPAPAPAPVPAPTPPGPAAAPAGAPGSGTPGAGSAAPGAGGDPARPGLSQQQRASQRKAQVRALPRAKKLEKLGVFSACKANDACKCNGWKNPKPPTAPRMDLQQPAANLSEACRSCEHPLADHVSHLENVSEDEINRLLGMVVDVENLFMSVHKEEDTDTKQVYFYLFKLLRKCILQMTRPVVEG...
                                   	                                                      sg++g+g     aggdparpglsqqqrasqrkaqvralprakkleklgvfsackan++ckcngwknp+pptaprmdlqqpaa+lse crsc+h+ladhvshlenvse+einrllgmvvdvenlfmsvhkeedtdtkqvyfylfkllrkcilqm++pvveg...
                                   	                                                                  AGGDPARPGLSQQQRASQRKAQVRALPRAKKLEKLGVFSACKANDACKCNGWKNPKPPTAPRMDLQQPAANLSEACRSCEHPLADHVSHLENVSEDEINRLLGMVVDVENLFMSVHKEEDTDTKQVYFYLFKLLRKCILQMTRPVVEG...

Ornithorhynchus anatinus@ENSOANP00000015773	ADHVSHLENVSEDEISRLLGMVVDVENLFMSVHKEEDTDPKQVYFLPVHGGVLNFVQYKFSHLAPKERQTMYELSKMFLLCLNYWKLETPAQFRQRSQAEDVAAYKVNYTRAQRGRGRPRGPGPRSGGRGLLKSIFTVTRRQLLEKFRVEKDKLVPEKRTLILTHFPKFLSMLEEEIYGENSPIWAAGFTLPAAEGTQLGPQPAAV...
                                           	adhvshlenvse+ei rllgmvvdvenlfmsvhkeedtd kqvyf pv+ gvlnfvqykfshl+pkerqtm+elskmfllclnywkletp+qfrqrsq +dva+ykvnytr q     pr       gr ll+siftvtrrqllekfrvekdkl+pekrtlilthfpkflsmleeeiygenspiw ++ft pa+egtqlg++pa v...
                                           	ADHVSHLENVSEDEISRLLGMVVDVENLFMSVHKEEDTDPKQVYFLPVHGGVLNFVQYKFSHLAPKERQTMYELSKMFLLCLNYWKLETPAQFRQRSQAEDVAAYKVNYTRAQ              GRGLLKSIFTVTRRQLLEKFRVEKDKLVPEKRTLILTHFPKFLSMLEEEIYGENSPIWAAGFTLPAAEGTQLGPQPAAV...

Xenopus tropicalis@ENSXETP00000004923	LIEAPEGLSPAEEGRNVPIQLTGSPAITQATEGSSEGIKEPETPNPNPRASPSGLEAPAAGHTATGTGGGSSSSTSDPARPGLSQQQRASQRKAQVRALPRAKKLEKLGVFSACKANDLCKCNGWKNPNPQTAPRMDLQQPAASLTEPCRSCGHALANHVSHLENVSEDEINRLLGMVVDVENLFMSVHKEEDTDTKQVYFYLFKLLRKCIL...
                                     	                                                                   g     + +dparpglsqqqrasqrkaqvralprakkleklgvfsackan+ ckcngwknpnp+taprmdlqqpaasl+epcrsc+hala+hvshlenvse+einrllgmvvdvenlfmsvhkeedtdtkqvyfylfkllrkcil...
                                     	                                                                            DPARPGLSQQQRASQRKAQVRALPRAKKLEKLGVFSACKANDLCKCNGWKNPNPQTAPRMDLQQPAASLTEPCRSCGHALANHVSHLENVSEDEINRLLGMVVDVENLFMSVHKEEDTDTKQVYFYLFKLLRKCIL...

test/GNTPAN12210_hmm_X.score  view on Meta::CPAN

                                     	EEGAARAPLRWPELEKLGVYSACKAEESCKCNGWKNPNPSPTPPRADLQQIIVSLTESCRSCSHALAAHVSHLENVSEEEMNRLLGIVLDVEYLFTCVHKEEDADTKQVYFYLFKLLRKSILHRGKPVVEGSLEKKPPFEKPSIEQGVNNFVQYKFSHLPSKERQTIVELAKMFLNRINYWHLEAPSQRRLRSPNDDISGYKENYTRWLCYC...

Dasypus novemcinctus@ENSDNOP00000011162	AEESCKCNGWKNPNPSPTPPRADLQHIIVSLTESCRSCSHALAAHVSHLENVSEEEMNRLLGIVLDVEYLFTCVHKEEDADTKQVYFYLFKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVNNFVQYKFSHLPSKERQTIVELAKMFLNRINYWHLEAPSQRRLHSPNDDISGYKENYTXXXXXXXXXXXXXXXXXXXXXXXXXXXX...
                                       	a+esckcngwknpnp pt+pr+dlq++++sl+e+crscshala+hvshlenvseee+nrllg+v+dve+lf++vhkeed+dtkqvyfylfk                               gv+nfvqykfshlp+kerqt+vel+kmfl+++nyw+le+psq+r++s+ndd++gyk+nyt                            ...
                                       	AEESCKCNGWKNPNPSPTPPRADLQHIIVSLTESCRSCSHALAAHVSHLENVSEEEMNRLLGIVLDVEYLFTCVHKEEDADTKQVYFYLFK                               GVNNFVQYKFSHLPSKERQTIVELAKMFLNRINYWHLEAPSQRRLHSPNDDISGYKENYT                            ...

Monodelphis domestica@ENSMODP00000032522	GASTARIAVKKAQLRSAPRAKKLEKLGVYSSCKAEESCKCNGWKNPNPPPTPPRADLQQIIVNLTESCRSCSHALAAHVSHLENVAEEEMNRLLGIVLDVEYLFTCVHKEEDADTKQVYFYLFKLLRKCILQMGKPVVEGSLESPPFEKPSIEQGVNNFVQYKFSHLPSKERQTIVELAKMFLNRINYWHLETPSQRRQRSPNDDVAGY...
                                        	    +r++++kaq+r++prakkleklgv+s+cka+esckcngwknpnp pt+pr+dlqq++++l+e+crscshala+hvshlenv eee+nrllg+v+dve+lf++vhkeed+dtkqvyfylfkllrkcilqmgkpvvegsl+sppfekp+ieqgv+nfvqykfshlp+kerqt+vel+kmfl+++nyw+letpsq+rqrs+nddvagy...
                                        	GASTARIAVKKAQLRSAPRAKKLEKLGVYSSCKAEESCKCNGWKNPNPPPTPPRADLQQIIVNLTESCRSCSHALAAHVSHLENVAEEEMNRLLGIVLDVEYLFTCVHKEEDADTKQVYFYLFKLLRKCILQMGKPVVEGSLESPPFEKPSIEQGVNNFVQYKFSHLPSKERQTIVELAKMFLNRINYWHLETPSQRRQRSPNDDVAGY...

Macropus eugenii@ENSMEUP00000013271	AEESCKCNGWKNPNPPPTPPRADVQQIIVSLTESCRSCSHALAAHVSHLENVSEEEMNRLLGIVLDVEYLFTCVHKEEDADTKQVYFYLFKLLRKCILQMGKPIVEGSLESPPFEKPSIEQGVNNFVHYKFSHLPSKERQTIVELAKMFLNRINYWHLETPSQRRLRSPNDDVAGYKVNYTRWLCYCHVPQFCDSLTRYETTQVFGRTLLRSVF...
                                   	a+esckcngwknpnp pt+pr+d qq+++sl+e+crscshala+hvshlenvseee+nrllg+v+dve+lf++vhkeed+dtkqvyfylfkllrkcilqmgkp vegsl+sppfekp+ieqgv+nfv+ykfshlp+kerqt+vel+kmfl+++nyw+letpsq+r+rs+nddvagykvnytrwlcychvpq+cdsl ryettqvfgrtllrs+f...
                                   	AEESCKCNGWKNPNPPPTPPRADVQQIIVSLTESCRSCSHALAAHVSHLENVSEEEMNRLLGIVLDVEYLFTCVHKEEDADTKQVYFYLFKLLRKCILQMGKPIVEGSLESPPFEKPSIEQGVNNFVHYKFSHLPSKERQTIVELAKMFLNRINYWHLETPSQRRLRSPNDDVAGYKVNYTRWLCYCHVPQFCDSLTRYETTQVFGRTLLRSVF...

Ornithorhynchus anatinus@ENSOANP00000007907	QAEESCKCNGWKNPNPPPTPPRADLQQTIVNLTESCRSCSHALAAHVSHLENESEEEMNRLLGIVLDVEYLFTCVHKEEDADTKQVYFYLFKLLRKCILQMGKPVVEGSLESPPFEKPSIEQGVNNFVQYKFSHLPSKERQTIVELAKMFLNRINYWHLETPSQRRLRSPNDDIAGYKVNYTRWLCYCNVPQFCDSLPRYETTQVF...
                                           	+a+esckcngwknpnp pt+pr+dlqq++++l+e+crscshala+hvshlen seee+nrllg+v+dve+lf++vhkeed+dtkqvyfylfkllrkcilqmgkpvvegsl+sppfekp+ieqgv+nfvqykfshlp+kerqt+vel+kmfl+++nyw+letpsq+r+rs+ndd+agykvnytrwlcyc+vpq+cdslpryettqvf...
                                           	QAEESCKCNGWKNPNPPPTPPRADLQQTIVNLTESCRSCSHALAAHVSHLENESEEEMNRLLGIVLDVEYLFTCVHKEEDADTKQVYFYLFKLLRKCILQMGKPVVEGSLESPPFEKPSIEQGVNNFVQYKFSHLPSKERQTIVELAKMFLNRINYWHLETPSQRRLRSPNDDIAGYKVNYTRWLCYCNVPQFCDSLPRYETTQVF...

Anolis carolinensis@ENSACAP00000000014	KPKLEKGVNNFVQYKFSHLPSKERQTIVELAKMFLNRINYWHLETPSQRRQRSPNDDIAGYKVNYTRWLCYCNVPQFCDSLPRYETTQVFGRTLLRSVFTVMRRQLLEHARQEKDKLPPEKRTLILTHFPKFLSMLEEEVYSQSSPIWDPDFIASSSRNAQLGIQTVISHPPVVRSAACNASPSSLEQSSGGNMSPACKAISGLDQNLGEK...
                                      	kp  e gv+nfvqykfshlp+kerqt+vel+kmfl+++nyw+letpsq+rqrs+ndd+agykvnytrwlcyc+vpq+cdslpryettqvfgrtllrs+ftv+rrqlle++r+ekdklppekrtlilthfpkflsmleee+y+++spiw++df  ++s+++qlgi     +p+vv+++++++sps+leq++gg++spack+ sgl++n gek...
                                      	KPKLEKGVNNFVQYKFSHLPSKERQTIVELAKMFLNRINYWHLETPSQRRQRSPNDDIAGYKVNYTRWLCYCNVPQFCDSLPRYETTQVFGRTLLRSVFTVMRRQLLEHARQEKDKLPPEKRTLILTHFPKFLSMLEEEVYSQSSPIWDPDFIASSSRNAQLGI                 SPSSLEQSSGGNMSPACKAISGLDQNLGEK...

test/GNTPAN12210_hmm_changeCost.ali  view on Meta::CPAN

>Homo sapiens@ENSP00000456712
                                                                                       GGDPARPGLSQQQ**RASQRKAQVRGLPRAKKLEKLGVFSACKANETCKCNGWKNPK*****P*PTAPRMDLQQPAANLSELCRSCEHPLA*DHVSH*LENVSEDEINRLLGMVVDVENLFMSV***HKEEDTDTKQVY*FYLFKLLRKCILQMTRPVVEGSL...
>L oxodonta_africana@ENSLAFP00000006713_that is really long with strange stuff
                                                                                       GGDPARPGLSQQQ**RASQRKAQVRGLPRAKKLEKLGVFSACKANETCKCNGWKNPK*****P*PTAPRMDLQQPAANLSELCRSCEHPLA*DHVSH*LENVSEDEINRLLGMVVDVENLFMSV***HKEEDTDTKQVY*FYLFKLLRKCILQMTRPVVEGSL...
>Canis familiaris@ENSCAFP00000023075
                                                                                       GGDPARPGLSQQQ**RASQRKAQVRGLPRAKKLEKLGVFSACKANETCKCNGWKNPK*****P*PTAPRMDLQQPAANLSELCRSCEHPLA*DHVSH*LENVSEDEINRLLGMVVDVENLFMSV***HKEEDTDTKQVY*FYLFKLLRKCILQMTRPVVEGSL...
>Mus musculus@ENSMUSP00000098017
                                                                  GSGGAGVG************SGGDPARPGLSQQQ**RASQRKAQVRGLPRAKKLEKLGVFSACKANETCKCNGWKNPK*****P*PTAPRMDLQQPAANLSELCRSCEHPLA*DHVSH*LENVSEDEINRLLGMVVDVENLFMSV***HKEEDTDTKQVY*FYLFK******************...
>Monodelphis domestica@ENSMODP00000018493
                                                                                      AGGDPARPGLSQQQ**RASQRKAQVRALPRAKKLEKLGVFSACKANDACKCNGWKNPK*****P*PTAPRMDLQQPAANLSEACRSCEHPLA*DHVSH*LENVSEDEINRLLGMVVDVENLFMSV***HKEEDTDTKQVY*FYLFKLLRKCILQMTRPVVEGSL...
>Macropus eugenii@ENSMEUP00000005117
                                                                                      AGGDPARPGLSQQQ**RASQRKAQVRALPRAKKLEKLGVFSACKANDACKCNGWKNPK*****P*PTAPRMDLQQPAANLSEACRSCEHPLA*DHVSH*LENVSEDEINRLLGMVVDVENLFMSV***HKEEDTDTKQVY*FYLFKLLRKCILQMTRPVVEGSL...
>Ornithorhynchus anatinus@ENSOANP00000015773
*********************************************************************************************************************************************************************************A*DHVSH*LENVSEDEISRLLGMVVDVENLFMSV***HKEEDTDPKQVY*FL*********************...
>Xenopus tropicalis@ENSXETP00000004923
                                                                                         DPARPGLSQQQ**RASQRKAQVRALPRAKKLEKLGVFSACKANDLCKCNGWKNPN*****P*QTAPRMDLQQPAASLTEPCRSCGHALA*NHVSH*LENVSEDEINRLLGMVVDVENLFMSV***HKEEDTDTKQVY*FYLFKLLRKCILQMIRPVVEGSL...
>Meleagris gallopavo@ENSMGAP00000006789
**********************************************************************************************************************************************************************************************************************************************************...
>Gallus gallus@ENSGALP00000005317
*********************************************************************************************************************************QANDACKCNGWKNPN*****P*PTAPRMDLQQPVTNLSEPCRSCSHALA*DHVSH*LENVSEEEINRLLGMVVDVENLFMSV***HKEEDTDTKQVY*FYLFKLLRKCILQMSQPVVEGSL...
>Taeniopygia guttata@ENSTGUP00000002617

test/GNTPAN12210_hmm_changeCost.ali  view on Meta::CPAN

>Mus musculus@ENSMUSP00000000724
                                                                                                           KAQLRSAPRAKKLEKLGVYSACKAEESCKCNGWKNPN*****PSPTPPRGDLQQIIVSLTESCRSCSHALA*AHVSH*LENVSEEEMDRLLGIVLDVEYLFTCV***HKEEDADTKQVY*FYLFKLLRKSILQRGKPVVEGSL...
>Canis familiaris@ENSCAFP00000008685
*********************************************************************************************************************************QAEESCKCNGWKNPN*****PSPTPPRADLQQIIVSLTESCRSCSHAL                                                       LLRKSILQRGKPVVEGSL...
>Loxodonta africana@ENSLAFP00000005288
                                                                                                                       LEKLGVYSACKAEESCKCNGWKNPN*****PSPTPPRADLQQIIVSLTESCRSCSHALA*AHVSH*LENVSEEEMNRLLGIVLDVEYLFTCV***HKEEDADTKQVY*FYLFKLLRKSILHRGKPVVEGSL...
>Dasypus novemcinctus@ENSDNOP00000011162
**********************************************************************************************************************************AEESCKCNGWKNPN*****PSPTPPRADLQHIIVSLTESCRSCSHALA*AHVSH*LENVSEEEMNRLLGIVLDVEYLFTCV***HKEEDADTKQVY*FYLFK                  ...
>Monodelphis domestica@ENSMODP00000032522
***********************************************************************************************GASTA**RIAVKKAQLRSAPRAKKLEKLGVYSSCKAEESCKCNGWKNPN*****PPPTPPRADLQQIIVNLTESCRSCSHALA*AHVSH*LENVAEEEMNRLLGIVLDVEYLFTCV***HKEEDADTKQVY*FYLFKLLRKCILQMGKPVVEGSL...
>Macropus eugenii@ENSMEUP00000013271
**********************************************************************************************************************************AEESCKCNGWKNPN*****PPPTPPRADVQQIIVSLTESCRSCSHALA*AHVSH*LENVSEEEMNRLLGIVLDVEYLFTCV***HKEEDADTKQVY*FYLFKLLRKCILQMGKPIVEGSL...
>Ornithorhynchus anatinus@ENSOANP00000007907
*********************************************************************************************************************************QAEESCKCNGWKNPN*****PPPTPPRADLQQTIVNLTESCRSCSHALA*AHVSH*LENESEEEMNRLLGIVLDVEYLFTCV***HKEEDADTKQVY*FYLFKLLRKCILQMGKPVVEGSL...
>Anolis carolinensis@ENSACAP00000000014
**********************************************************************************************************************************************************************************************************************************************************...
>Meleagris gallopavo@ENSMGAP00000011451
**********************************************************************************************************************************************************************************************************************************************************...
>Gallus gallus@ENSGALP00000018380
*********************************************************************************************************************************QAEESCKCNGWKNPN*****PPPTPPRADLQQAVVSLTEPCRSCSHTLA*AHVSH*LENVSEEEMNRLLGIVLDVEYLFTCV***HKEEDADTKQVY*FYLFKLLRKCILQMGKPVIEGSL...
>Meleagris gallopavo@ENSMGAP00000011414

test/GNTPAN12210_hmm_changeCost.log  view on Meta::CPAN

L oxodonta_africana@ENSLAFP00000006713_that is really long with strange stuff
	12-87
Canis familiaris@ENSCAFP00000023075
	1-87
Mus musculus@ENSMUSP00000098017
	1-66
	499-529
Monodelphis domestica@ENSMODP00000018493
	64-86
	621-692
Macropus eugenii@ENSMEUP00000005117
	1-86
	647-692
Ornithorhynchus anatinus@ENSOANP00000015773
	334-352
	460-529
Xenopus tropicalis@ENSXETP00000004923
	1-89
Meleagris gallopavo@ENSMGAP00000006789
	451-528
Gallus gallus@ENSGALP00000005317

test/GNTPAN12210_hmm_changeCost.log  view on Meta::CPAN

	107-119
	412-433
Dasypus novemcinctus@ENSDNOP00000011162
	233-265
	326-390
	412-450
	587-646
	846-891
Monodelphis domestica@ENSMODP00000032522
	412-433
Macropus eugenii@ENSMEUP00000013271
	390-433
	577-646
	710-934
Ornithorhynchus anatinus@ENSOANP00000007907
	412-433
Anolis carolinensis@ENSACAP00000000014
	412-446
Meleagris gallopavo@ENSMGAP00000011451
Gallus gallus@ENSGALP00000018380
	425-433

test/GNTPAN12210_hmm_changeCost.score  view on Meta::CPAN

                                   	                                                                        GGDPARPGLSQQQRASQRKAQVRGLPRAKKLEKLGVFSACKANETCKCNGWKNPKPPTAPRMDLQQPAANLSELCRSCEHPLADHVSHLENVSEDEINRLLGMVVDVENLFMSVHKEEDTDTKQVYFYLFKLLRKCILQMTR...

Mus musculus@ENSMUSP00000098017	MAEPSQAPNPVPAAQPRPLHSPAPAPTSTPAPSPASASTPAPTPAPAPAPAAAPAGSTGSGGAGVGSGGDPARPGLSQQQRASQRKAQVRGLPRAKKLEKLGVFSACKANETCKCNGWKNPKPPTAPRMDLQQPAANLSELCRSCEHPLADHVSHLENVSEDEINRLLGMVVDVENLFMSVHKEEDTDTKQVYFYLFKGVLNFVQYKFSHLAPRERQT...
                               	                                                         +gsg+ag+g+ggdparpglsqqqrasqrkaqvr+lprakkleklgvfsackane+ckcngwknp+pptaprmdlqqpaa+lse crsc+h+ladhvshlenvse+einrllgmvvdvenlfmsvhkeedtdtkqvyfylfkgvlnfvqykfshl+p+erqt...
                               	                                                          GSGGAGVGSGGDPARPGLSQQQRASQRKAQVRGLPRAKKLEKLGVFSACKANETCKCNGWKNPKPPTAPRMDLQQPAANLSELCRSCEHPLADHVSHLENVSEDEINRLLGMVVDVENLFMSVHKEEDTDTKQVYFYLFKGVLNFVQYKFSHLAPRERQT...

Monodelphis domestica@ENSMODP00000018493	GAPGSGTPGVGSGAPGAGGDPARPGLSQQQRASQRKAQVRALPRAKKLEKLGVFSACKANDACKCNGWKNPKPPTAPRMDLQQPAANLSEACRSCEHPLADHVSHLENVSEDEINRLLGMVVDVENLFMSVHKEEDTDTKQVYFYLFKLLRKCILQMTRPVVEGSLGSPPFEKPNIEQGVLNFVQFKFSHLAPRERQTMFELSKMFLLC...
                                        	    sg++g+g     aggdparpglsqqqrasqrkaqvralprakkleklgvfsackan++ckcngwknp+pptaprmdlqqpaa+lse crsc+h+ladhvshlenvse+einrllgmvvdvenlfmsvhkeedtdtkqvyfylfkllrkcilqm++pvvegslgsppfekpnieqgvlnfvq+kfshl+p+erqtm+elskmfllc...
                                        	                AGGDPARPGLSQQQRASQRKAQVRALPRAKKLEKLGVFSACKANDACKCNGWKNPKPPTAPRMDLQQPAANLSEACRSCEHPLADHVSHLENVSEDEINRLLGMVVDVENLFMSVHKEEDTDTKQVYFYLFKLLRKCILQMTRPVVEGSLGSPPFEKPNIEQGVLNFVQFKFSHLAPRERQTMFELSKMFLLC...

Macropus eugenii@ENSMEUP00000005117	MAEPPQAQAQVPTQTQAQAQAPVPEPAPAPAPAPAPVPAPTPPGPAAAPAGAPGSGTPGAGSAAPGAGGDPARPGLSQQQRASQRKAQVRALPRAKKLEKLGVFSACKANDACKCNGWKNPKPPTAPRMDLQQPAANLSEACRSCEHPLADHVSHLENVSEDEINRLLGMVVDVENLFMSVHKEEDTDTKQVYFYLFKLLRKCILQMTRPVVEG...
                                   	                                                      sg++g+g     aggdparpglsqqqrasqrkaqvralprakkleklgvfsackan++ckcngwknp+pptaprmdlqqpaa+lse crsc+h+ladhvshlenvse+einrllgmvvdvenlfmsvhkeedtdtkqvyfylfkllrkcilqm++pvveg...
                                   	                                                                  AGGDPARPGLSQQQRASQRKAQVRALPRAKKLEKLGVFSACKANDACKCNGWKNPKPPTAPRMDLQQPAANLSEACRSCEHPLADHVSHLENVSEDEINRLLGMVVDVENLFMSVHKEEDTDTKQVYFYLFKLLRKCILQMTRPVVEG...

Ornithorhynchus anatinus@ENSOANP00000015773	ADHVSHLENVSEDEISRLLGMVVDVENLFMSVHKEEDTDPKQVYFLPVHGGVLNFVQYKFSHLAPKERQTMYELSKMFLLCLNYWKLETPAQFRQRSQAEDVAAYKVNYTRAQRGRGRPRGPGPRSGGRGLLKSIFTVTRRQLLEKFRVEKDKLVPEKRTLILTHFPKFLSMLEEEIYGENSPIWAAGFTLPAAEGTQLGPQPAAV...
                                           	adhvshlenvse+ei rllgmvvdvenlfmsvhkeedtd kqvyf pv+ gvlnfvqykfshl+pkerqtm+elskmfllclnywkletp+qfrqrsq +dva+ykvnytr q     pr       gr ll+siftvtrrqllekfrvekdkl+pekrtlilthfpkflsmleeeiygenspiw ++ft pa+egtqlg++pa v...
                                           	ADHVSHLENVSEDEISRLLGMVVDVENLFMSVHKEEDTDPKQVYFLPVHGGVLNFVQYKFSHLAPKERQTMYELSKMFLLCLNYWKLETPAQFRQRSQAEDVAAYKVNYTR                   LLKSIFTVTRRQLLEKFRVEKDKLVPEKRTLILTHFPKFLSMLEEEIYGENSPIWAAGFTLPAAEGTQLGPQPAAV...

Xenopus tropicalis@ENSXETP00000004923	LIEAPEGLSPAEEGRNVPIQLTGSPAITQATEGSSEGIKEPETPNPNPRASPSGLEAPAAGHTATGTGGGSSSSTSDPARPGLSQQQRASQRKAQVRALPRAKKLEKLGVFSACKANDLCKCNGWKNPNPQTAPRMDLQQPAASLTEPCRSCGHALANHVSHLENVSEDEINRLLGMVVDVENLFMSVHKEEDTDTKQVYFYLFKLLRKCIL...
                                     	                                                                   g     + +dparpglsqqqrasqrkaqvralprakkleklgvfsackan+ ckcngwknpnp+taprmdlqqpaasl+epcrsc+hala+hvshlenvse+einrllgmvvdvenlfmsvhkeedtdtkqvyfylfkllrkcil...
                                     	                                                                            DPARPGLSQQQRASQRKAQVRALPRAKKLEKLGVFSACKANDLCKCNGWKNPNPQTAPRMDLQQPAASLTEPCRSCGHALANHVSHLENVSEDEINRLLGMVVDVENLFMSVHKEEDTDTKQVYFYLFKLLRKCIL...

test/GNTPAN12210_hmm_changeCost.score  view on Meta::CPAN

                                     	             LEKLGVYSACKAEESCKCNGWKNPNPSPTPPRADLQQIIVSLTESCRSCSHALAAHVSHLENVSEEEMNRLLGIVLDVEYLFTCVHKEEDADTKQVYFYLFKLLRKSILHRGKPVVEGSLEKKPPFEKPSIEQGVNNFVQYKFSHLPSKERQTIVELAKMFLNRINYWHLEAPSQRRLRSPNDDISGYKENYTRWLCYC...

Dasypus novemcinctus@ENSDNOP00000011162	AEESCKCNGWKNPNPSPTPPRADLQHIIVSLTESCRSCSHALAAHVSHLENVSEEEMNRLLGIVLDVEYLFTCVHKEEDADTKQVYFYLFKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVNNFVQYKFSHLPSKERQTIVELAKMFLNRINYWHLEAPSQRRLHSPNDDISGYKENYTXXXXXXXXXXXXXXXXXXXXXXXXXXXX...
                                       	a+esckcngwknpnp pt+pr+dlq++++sl+e+crscshala+hvshlenvseee+nrllg+v+dve+lf++vhkeed+dtkqvyfylfk                               gv+nfvqykfshlp+kerqt+vel+kmfl+++nyw+le+psq+r++s+ndd++gyk+nyt                            ...
                                       	AEESCKCNGWKNPNPSPTPPRADLQHIIVSLTESCRSCSHALAAHVSHLENVSEEEMNRLLGIVLDVEYLFTCVHKEEDADTKQVYFYLFK                               GVNNFVQYKFSHLPSKERQTIVELAKMFLNRINYWHLEAPSQRRLHSPNDDISGYKENYT                            ...

Monodelphis domestica@ENSMODP00000032522	GASTARIAVKKAQLRSAPRAKKLEKLGVYSSCKAEESCKCNGWKNPNPPPTPPRADLQQIIVNLTESCRSCSHALAAHVSHLENVAEEEMNRLLGIVLDVEYLFTCVHKEEDADTKQVYFYLFKLLRKCILQMGKPVVEGSLESPPFEKPSIEQGVNNFVQYKFSHLPSKERQTIVELAKMFLNRINYWHLETPSQRRQRSPNDDVAGY...
                                        	    +r++++kaq+r++prakkleklgv+s+cka+esckcngwknpnp pt+pr+dlqq++++l+e+crscshala+hvshlenv eee+nrllg+v+dve+lf++vhkeed+dtkqvyfylfkllrkcilqmgkpvvegsl+sppfekp+ieqgv+nfvqykfshlp+kerqt+vel+kmfl+++nyw+letpsq+rqrs+nddvagy...
                                        	GASTARIAVKKAQLRSAPRAKKLEKLGVYSSCKAEESCKCNGWKNPNPPPTPPRADLQQIIVNLTESCRSCSHALAAHVSHLENVAEEEMNRLLGIVLDVEYLFTCVHKEEDADTKQVYFYLFKLLRKCILQMGKPVVEGSLESPPFEKPSIEQGVNNFVQYKFSHLPSKERQTIVELAKMFLNRINYWHLETPSQRRQRSPNDDVAGY...

Macropus eugenii@ENSMEUP00000013271	AEESCKCNGWKNPNPPPTPPRADVQQIIVSLTESCRSCSHALAAHVSHLENVSEEEMNRLLGIVLDVEYLFTCVHKEEDADTKQVYFYLFKLLRKCILQMGKPIVEGSLESPPFEKPSIEQGVNNFVHYKFSHLPSKERQTIVELAKMFLNRINYWHLETPSQRRLRSPNDDVAGYKVNYTRWLCYCHVPQFCDSLTRYETTQVFGRTLLRSVF...
                                   	a+esckcngwknpnp pt+pr+d qq+++sl+e+crscshala+hvshlenvseee+nrllg+v+dve+lf++vhkeed+dtkqvyfylfkllrkcilqmgkp vegsl+sppfekp+ieqgv+nfv+ykfshlp+kerqt+vel+kmfl+++nyw+letpsq+r+rs+nddvagykvnytrwlcychvpq+cdsl ryettqvfgrtllrs+f...
                                   	AEESCKCNGWKNPNPPPTPPRADVQQIIVSLTESCRSCSHALAAHVSHLENVSEEEMNRLLGIVLDVEYLFTCVHKEEDADTKQVYFYLFKLLRKCILQMGKPIVEGSLESPPFEKPSIEQGVNNFVHYKFSHLPSKERQTIVELAKMFLNRINYWHLETPSQRRLRSPNDDVAGYKVNYTRWLCYCHVPQFCDSLTRYETTQVFGRTLLRSVF...

Ornithorhynchus anatinus@ENSOANP00000007907	QAEESCKCNGWKNPNPPPTPPRADLQQTIVNLTESCRSCSHALAAHVSHLENESEEEMNRLLGIVLDVEYLFTCVHKEEDADTKQVYFYLFKLLRKCILQMGKPVVEGSLESPPFEKPSIEQGVNNFVQYKFSHLPSKERQTIVELAKMFLNRINYWHLETPSQRRLRSPNDDIAGYKVNYTRWLCYCNVPQFCDSLPRYETTQVF...
                                           	+a+esckcngwknpnp pt+pr+dlqq++++l+e+crscshala+hvshlen seee+nrllg+v+dve+lf++vhkeed+dtkqvyfylfkllrkcilqmgkpvvegsl+sppfekp+ieqgv+nfvqykfshlp+kerqt+vel+kmfl+++nyw+letpsq+r+rs+ndd+agykvnytrwlcyc+vpq+cdslpryettqvf...
                                           	QAEESCKCNGWKNPNPPPTPPRADLQQTIVNLTESCRSCSHALAAHVSHLENESEEEMNRLLGIVLDVEYLFTCVHKEEDADTKQVYFYLFKLLRKCILQMGKPVVEGSLESPPFEKPSIEQGVNNFVQYKFSHLPSKERQTIVELAKMFLNRINYWHLETPSQRRLRSPNDDIAGYKVNYTRWLCYCNVPQFCDSLPRYETTQVF...

Anolis carolinensis@ENSACAP00000000014	KPKLEKGVNNFVQYKFSHLPSKERQTIVELAKMFLNRINYWHLETPSQRRQRSPNDDIAGYKVNYTRWLCYCNVPQFCDSLPRYETTQVFGRTLLRSVFTVMRRQLLEHARQEKDKLPPEKRTLILTHFPKFLSMLEEEVYSQSSPIWDPDFIASSSRNAQLGIQTVISHPPVVRSAACNASPSSLEQSSGGNMSPACKAISGLDQNLGEK...
                                      	kp  e gv+nfvqykfshlp+kerqt+vel+kmfl+++nyw+letpsq+rqrs+ndd+agykvnytrwlcyc+vpq+cdslpryettqvfgrtllrs+ftv+rrqlle++r+ekdklppekrtlilthfpkflsmleee+y+++spiw++df  ++s+++qlgi     +p+vv+++++++sps+leq++gg++spack+ sgl++n gek...
                                      	KPKLEKGVNNFVQYKFSHLPSKERQTIVELAKMFLNRINYWHLETPSQRRQRSPNDDIAGYKVNYTRWLCYCNVPQFCDSLPRYETTQVFGRTLLRSVFTVMRRQLLEHARQEKDKLPPEKRTLILTHFPKFLSMLEEEVYSQSSPIWDPDF                             SPSSLEQSSGGNMSPACKAISGLDQNLGEK...

test/GNTPAN12210_hmm_changeID.ali  view on Meta::CPAN

>Homo sapiens@ENSP00000456712_hmmcleaned
                                                                                       GGDPARPGLSQQQ**RASQRKAQVRGLPRAKKLEKLGVFSACKANETCKCNGWKNPK*****P*PTAPRMDLQQPAANLSELCRSCEHPLA*DHVSH*LENVSEDEINRLLGMVVDVENLFMSV***HKEEDTDTKQVY*FYLFKLLRKCILQMTRPVVEGSL...
>L oxodonta_africana@ENSLAFP00000006713_that is really long with strange stuff_hmmcleaned
                                                                                       GGDPARPGLSQQQ**RASQRKAQVRGLPRAKKLEKLGVFSACKANETCKCNGWKNPK*****P*PTAPRMDLQQPAANLSELCRSCEHPLA*DHVSH*LENVSEDEINRLLGMVVDVENLFMSV***HKEEDTDTKQVY*FYLFKLLRKCILQMTRPVVEGSL...
>Canis familiaris@ENSCAFP00000023075_hmmcleaned
                                                                                       GGDPARPGLSQQQ**RASQRKAQVRGLPRAKKLEKLGVFSACKANETCKCNGWKNPK*****P*PTAPRMDLQQPAANLSELCRSCEHPLA*DHVSH*LENVSEDEINRLLGMVVDVENLFMSV***HKEEDTDTKQVY*FYLFKLLRKCILQMTRPVVEGSL...
>Mus musculus@ENSMUSP00000098017_hmmcleaned
                                                                  GSGGAGVG************SGGDPARPGLSQQQ**RASQRKAQVRGLPRAKKLEKLGVFSACKANETCKCNGWKNPK*****P*PTAPRMDLQQPAANLSELCRSCEHPLA*DHVSH*LENVSEDEINRLLGMVVDVENLFMSV***HKEEDTDTKQVY*FYLFK******************...
>Monodelphis domestica@ENSMODP00000018493_hmmcleaned
***************************************************************GAPGSGTPGVGSGAPG*******AGGDPARPGLSQQQ**RASQRKAQVRALPRAKKLEKLGVFSACKANDACKCNGWKNPK*****P*PTAPRMDLQQPAANLSEACRSCEHPLA*DHVSH*LENVSEDEINRLLGMVVDVENLFMSV***HKEEDTDTKQVY*FYLFKLLRKCILQMTRPVVEGSL...
>Macropus eugenii@ENSMEUP00000005117_hmmcleaned
                                                                                      AGGDPARPGLSQQQ**RASQRKAQVRALPRAKKLEKLGVFSACKANDACKCNGWKNPK*****P*PTAPRMDLQQPAANLSEACRSCEHPLA*DHVSH*LENVSEDEINRLLGMVVDVENLFMSV***HKEEDTDTKQVY*FYLFKLLRKCILQMTRPVVEGSL...
>Ornithorhynchus anatinus@ENSOANP00000015773_hmmcleaned
*********************************************************************************************************************************************************************************A*DHVSH*LENVSEDEISRLLGMVVDVENLFMSV***HKEEDTDPKQVY*FL*********************...
>Xenopus tropicalis@ENSXETP00000004923_hmmcleaned
                                                                                         DPARPGLSQQQ**RASQRKAQVRALPRAKKLEKLGVFSACKANDLCKCNGWKNPN*****P*QTAPRMDLQQPAASLTEPCRSCGHALA*NHVSH*LENVSEDEINRLLGMVVDVENLFMSV***HKEEDTDTKQVY*FYLFKLLRKCILQMIRPVVEGSL...
>Meleagris gallopavo@ENSMGAP00000006789_hmmcleaned
**********************************************************************************************************************************************************************************************************************************************************...
>Gallus gallus@ENSGALP00000005317_hmmcleaned
*********************************************************************************************************************************QANDACKCNGWKNPN*****P*PTAPRMDLQQPVTNLSEPCRSCSHALA*DHVSH*LENVSEEEINRLLGMVVDVENLFMSV***HKEEDTDTKQVY*FYLFKLLRKCILQMSQPVVEGSL...
>Taeniopygia guttata@ENSTGUP00000002617_hmmcleaned

test/GNTPAN12210_hmm_changeID.ali  view on Meta::CPAN

>Mus musculus@ENSMUSP00000000724_hmmcleaned
                                                                                                           KAQLRSAPRAKKLEKLGVYSACKAEESCKCNGWKNPN*****PSPTPPRGDLQQIIVSLTESCRSCSHALA*AHVSH*LENVSEEEMDRLLGIVLDVEYLFTCV***HKEEDADTKQVY*FYLFKLLRKSILQRGKPVVEGSL...
>Canis familiaris@ENSCAFP00000008685_hmmcleaned
*********************************************************************************************************************************QAEESCKCNGWKNPN*****PSPTPPRADLQQIIVSLTESCRSCSHAL                                                       LLRKSILQRGKPVVEGSL...
>Loxodonta africana@ENSLAFP00000005288_hmmcleaned
**********************************************************************************************************EEGAARAPLRWPELEKLGVYSACKAEESCKCNGWKNPN*****PSPTPPRADLQQIIVSLTESCRSCSHALA*AHVSH*LENVSEEEMNRLLGIVLDVEYLFTCV***HKEEDADTKQVY*FYLFKLLRKSILHRGKPVVEGSL...
>Dasypus novemcinctus@ENSDNOP00000011162_hmmcleaned
**********************************************************************************************************************************AEESCKCNGWKNPN*****PSPTPPRADLQHIIVSLTESCRSCSHALA*AHVSH*LENVSEEEMNRLLGIVLDVEYLFTCV***HKEEDADTKQVY*FYLFK                  ...
>Monodelphis domestica@ENSMODP00000032522_hmmcleaned
***********************************************************************************************GASTA**RIAVKKAQLRSAPRAKKLEKLGVYSSCKAEESCKCNGWKNPN*****PPPTPPRADLQQIIVNLTESCRSCSHALA*AHVSH*LENVAEEEMNRLLGIVLDVEYLFTCV***HKEEDADTKQVY*FYLFKLLRKCILQMGKPVVEGSL...
>Macropus eugenii@ENSMEUP00000013271_hmmcleaned
**********************************************************************************************************************************AEESCKCNGWKNPN*****PPPTPPRADVQQIIVSLTESCRSCSHALA*AHVSH*LENVSEEEMNRLLGIVLDVEYLFTCV***HKEEDADTKQVY*FYLFKLLRKCILQMGKPIVEGSL...
>Ornithorhynchus anatinus@ENSOANP00000007907_hmmcleaned
*********************************************************************************************************************************QAEESCKCNGWKNPN*****PPPTPPRADLQQTIVNLTESCRSCSHALA*AHVSH*LENESEEEMNRLLGIVLDVEYLFTCV***HKEEDADTKQVY*FYLFKLLRKCILQMGKPVVEGSL...
>Anolis carolinensis@ENSACAP00000000014_hmmcleaned
**********************************************************************************************************************************************************************************************************************************************************...
>Meleagris gallopavo@ENSMGAP00000011451_hmmcleaned
**********************************************************************************************************************************************************************************************************************************************************...
>Gallus gallus@ENSGALP00000018380_hmmcleaned
*********************************************************************************************************************************QAEESCKCNGWKNPN*****PPPTPPRADLQQAVVSLTEPCRSCSHTLA*AHVSH*LENVSEEEMNRLLGIVLDVEYLFTCV***HKEEDADTKQVY*FYLFKLLRKCILQMGKPVIEGSL...
>Meleagris gallopavo@ENSMGAP00000011414_hmmcleaned

test/GNTPAN12210_hmm_changeID.log  view on Meta::CPAN

	1-87
L oxodonta_africana@ENSLAFP00000006713_that is really long with strange stuff
	12-87
Canis familiaris@ENSCAFP00000023075
	1-87
Mus musculus@ENSMUSP00000098017
	1-66
	499-529
Monodelphis domestica@ENSMODP00000018493
	621-692
Macropus eugenii@ENSMEUP00000005117
	1-86
	647-692
Ornithorhynchus anatinus@ENSOANP00000015773
	336-349
	460-529
Xenopus tropicalis@ENSXETP00000004923
	1-89
Meleagris gallopavo@ENSMGAP00000006789
	451-528
Gallus gallus@ENSGALP00000005317

test/GNTPAN12210_hmm_changeID.log  view on Meta::CPAN

	178-232
	412-433
Loxodonta africana@ENSLAFP00000005288
Dasypus novemcinctus@ENSDNOP00000011162
	233-265
	326-390
	412-450
	587-646
	856-891
Monodelphis domestica@ENSMODP00000032522
Macropus eugenii@ENSMEUP00000013271
	390-433
	577-646
	710-934
Ornithorhynchus anatinus@ENSOANP00000007907
Anolis carolinensis@ENSACAP00000000014
	425-446
Meleagris gallopavo@ENSMGAP00000011451
Gallus gallus@ENSGALP00000018380
Meleagris gallopavo@ENSMGAP00000011414
Taeniopygia guttata@ENSTGUP00000003370

test/GNTPAN12210_hmm_changeID.score  view on Meta::CPAN

                                   	                                                                        GGDPARPGLSQQQRASQRKAQVRGLPRAKKLEKLGVFSACKANETCKCNGWKNPKPPTAPRMDLQQPAANLSELCRSCEHPLADHVSHLENVSEDEINRLLGMVVDVENLFMSVHKEEDTDTKQVYFYLFKLLRKCILQMTR...

Mus musculus@ENSMUSP00000098017	MAEPSQAPNPVPAAQPRPLHSPAPAPTSTPAPSPASASTPAPTPAPAPAPAAAPAGSTGSGGAGVGSGGDPARPGLSQQQRASQRKAQVRGLPRAKKLEKLGVFSACKANETCKCNGWKNPKPPTAPRMDLQQPAANLSELCRSCEHPLADHVSHLENVSEDEINRLLGMVVDVENLFMSVHKEEDTDTKQVYFYLFKGVLNFVQYKFSHLAPRERQT...
                               	                                                         +gsg+ag+g+ggdparpglsqqqrasqrkaqvr+lprakkleklgvfsackane+ckcngwknp+pptaprmdlqqpaa+lse crsc+h+ladhvshlenvse+einrllgmvvdvenlfmsvhkeedtdtkqvyfylfkgvlnfvqykfshl+p+erqt...
                               	                                                          GSGGAGVGSGGDPARPGLSQQQRASQRKAQVRGLPRAKKLEKLGVFSACKANETCKCNGWKNPKPPTAPRMDLQQPAANLSELCRSCEHPLADHVSHLENVSEDEINRLLGMVVDVENLFMSVHKEEDTDTKQVYFYLFKGVLNFVQYKFSHLAPRERQT...

Monodelphis domestica@ENSMODP00000018493	GAPGSGTPGVGSGAPGAGGDPARPGLSQQQRASQRKAQVRALPRAKKLEKLGVFSACKANDACKCNGWKNPKPPTAPRMDLQQPAANLSEACRSCEHPLADHVSHLENVSEDEINRLLGMVVDVENLFMSVHKEEDTDTKQVYFYLFKLLRKCILQMTRPVVEGSLGSPPFEKPNIEQGVLNFVQFKFSHLAPRERQTMFELSKMFLLC...
                                        	    sg++g+g     aggdparpglsqqqrasqrkaqvralprakkleklgvfsackan++ckcngwknp+pptaprmdlqqpaa+lse crsc+h+ladhvshlenvse+einrllgmvvdvenlfmsvhkeedtdtkqvyfylfkllrkcilqm++pvvegslgsppfekpnieqgvlnfvq+kfshl+p+erqtm+elskmfllc...
                                        	GAPGSGTPGVGSGAPGAGGDPARPGLSQQQRASQRKAQVRALPRAKKLEKLGVFSACKANDACKCNGWKNPKPPTAPRMDLQQPAANLSEACRSCEHPLADHVSHLENVSEDEINRLLGMVVDVENLFMSVHKEEDTDTKQVYFYLFKLLRKCILQMTRPVVEGSLGSPPFEKPNIEQGVLNFVQFKFSHLAPRERQTMFELSKMFLLC...

Macropus eugenii@ENSMEUP00000005117	MAEPPQAQAQVPTQTQAQAQAPVPEPAPAPAPAPAPVPAPTPPGPAAAPAGAPGSGTPGAGSAAPGAGGDPARPGLSQQQRASQRKAQVRALPRAKKLEKLGVFSACKANDACKCNGWKNPKPPTAPRMDLQQPAANLSEACRSCEHPLADHVSHLENVSEDEINRLLGMVVDVENLFMSVHKEEDTDTKQVYFYLFKLLRKCILQMTRPVVEG...
                                   	                                                      sg++g+g     aggdparpglsqqqrasqrkaqvralprakkleklgvfsackan++ckcngwknp+pptaprmdlqqpaa+lse crsc+h+ladhvshlenvse+einrllgmvvdvenlfmsvhkeedtdtkqvyfylfkllrkcilqm++pvveg...
                                   	                                                                  AGGDPARPGLSQQQRASQRKAQVRALPRAKKLEKLGVFSACKANDACKCNGWKNPKPPTAPRMDLQQPAANLSEACRSCEHPLADHVSHLENVSEDEINRLLGMVVDVENLFMSVHKEEDTDTKQVYFYLFKLLRKCILQMTRPVVEG...

Ornithorhynchus anatinus@ENSOANP00000015773	ADHVSHLENVSEDEISRLLGMVVDVENLFMSVHKEEDTDPKQVYFLPVHGGVLNFVQYKFSHLAPKERQTMYELSKMFLLCLNYWKLETPAQFRQRSQAEDVAAYKVNYTRAQRGRGRPRGPGPRSGGRGLLKSIFTVTRRQLLEKFRVEKDKLVPEKRTLILTHFPKFLSMLEEEIYGENSPIWAAGFTLPAAEGTQLGPQPAAV...
                                           	adhvshlenvse+ei rllgmvvdvenlfmsvhkeedtd kqvyf pv+ gvlnfvqykfshl+pkerqtm+elskmfllclnywkletp+qfrqrsq +dva+ykvnytr q     pr       gr ll+siftvtrrqllekfrvekdkl+pekrtlilthfpkflsmleeeiygenspiw ++ft pa+egtqlg++pa v...
                                           	ADHVSHLENVSEDEISRLLGMVVDVENLFMSVHKEEDTDPKQVYFLPVHGGVLNFVQYKFSHLAPKERQTMYELSKMFLLCLNYWKLETPAQFRQRSQAEDVAAYKVNYTRAQ              GRGLLKSIFTVTRRQLLEKFRVEKDKLVPEKRTLILTHFPKFLSMLEEEIYGENSPIWAAGFTLPAAEGTQLGPQPAAV...

Xenopus tropicalis@ENSXETP00000004923	LIEAPEGLSPAEEGRNVPIQLTGSPAITQATEGSSEGIKEPETPNPNPRASPSGLEAPAAGHTATGTGGGSSSSTSDPARPGLSQQQRASQRKAQVRALPRAKKLEKLGVFSACKANDLCKCNGWKNPNPQTAPRMDLQQPAASLTEPCRSCGHALANHVSHLENVSEDEINRLLGMVVDVENLFMSVHKEEDTDTKQVYFYLFKLLRKCIL...
                                     	                                                                   g     + +dparpglsqqqrasqrkaqvralprakkleklgvfsackan+ ckcngwknpnp+taprmdlqqpaasl+epcrsc+hala+hvshlenvse+einrllgmvvdvenlfmsvhkeedtdtkqvyfylfkllrkcil...
                                     	                                                                            DPARPGLSQQQRASQRKAQVRALPRAKKLEKLGVFSACKANDLCKCNGWKNPNPQTAPRMDLQQPAASLTEPCRSCGHALANHVSHLENVSEDEINRLLGMVVDVENLFMSVHKEEDTDTKQVYFYLFKLLRKCIL...

test/GNTPAN12210_hmm_changeID.score  view on Meta::CPAN

                                     	EEGAARAPLRWPELEKLGVYSACKAEESCKCNGWKNPNPSPTPPRADLQQIIVSLTESCRSCSHALAAHVSHLENVSEEEMNRLLGIVLDVEYLFTCVHKEEDADTKQVYFYLFKLLRKSILHRGKPVVEGSLEKKPPFEKPSIEQGVNNFVQYKFSHLPSKERQTIVELAKMFLNRINYWHLEAPSQRRLRSPNDDISGYKENYTRWLCYC...

Dasypus novemcinctus@ENSDNOP00000011162	AEESCKCNGWKNPNPSPTPPRADLQHIIVSLTESCRSCSHALAAHVSHLENVSEEEMNRLLGIVLDVEYLFTCVHKEEDADTKQVYFYLFKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVNNFVQYKFSHLPSKERQTIVELAKMFLNRINYWHLEAPSQRRLHSPNDDISGYKENYTXXXXXXXXXXXXXXXXXXXXXXXXXXXX...
                                       	a+esckcngwknpnp pt+pr+dlq++++sl+e+crscshala+hvshlenvseee+nrllg+v+dve+lf++vhkeed+dtkqvyfylfk                               gv+nfvqykfshlp+kerqt+vel+kmfl+++nyw+le+psq+r++s+ndd++gyk+nyt                            ...
                                       	AEESCKCNGWKNPNPSPTPPRADLQHIIVSLTESCRSCSHALAAHVSHLENVSEEEMNRLLGIVLDVEYLFTCVHKEEDADTKQVYFYLFK                               GVNNFVQYKFSHLPSKERQTIVELAKMFLNRINYWHLEAPSQRRLHSPNDDISGYKENYT                            ...

Monodelphis domestica@ENSMODP00000032522	GASTARIAVKKAQLRSAPRAKKLEKLGVYSSCKAEESCKCNGWKNPNPPPTPPRADLQQIIVNLTESCRSCSHALAAHVSHLENVAEEEMNRLLGIVLDVEYLFTCVHKEEDADTKQVYFYLFKLLRKCILQMGKPVVEGSLESPPFEKPSIEQGVNNFVQYKFSHLPSKERQTIVELAKMFLNRINYWHLETPSQRRQRSPNDDVAGY...
                                        	    +r++++kaq+r++prakkleklgv+s+cka+esckcngwknpnp pt+pr+dlqq++++l+e+crscshala+hvshlenv eee+nrllg+v+dve+lf++vhkeed+dtkqvyfylfkllrkcilqmgkpvvegsl+sppfekp+ieqgv+nfvqykfshlp+kerqt+vel+kmfl+++nyw+letpsq+rqrs+nddvagy...
                                        	GASTARIAVKKAQLRSAPRAKKLEKLGVYSSCKAEESCKCNGWKNPNPPPTPPRADLQQIIVNLTESCRSCSHALAAHVSHLENVAEEEMNRLLGIVLDVEYLFTCVHKEEDADTKQVYFYLFKLLRKCILQMGKPVVEGSLESPPFEKPSIEQGVNNFVQYKFSHLPSKERQTIVELAKMFLNRINYWHLETPSQRRQRSPNDDVAGY...

Macropus eugenii@ENSMEUP00000013271	AEESCKCNGWKNPNPPPTPPRADVQQIIVSLTESCRSCSHALAAHVSHLENVSEEEMNRLLGIVLDVEYLFTCVHKEEDADTKQVYFYLFKLLRKCILQMGKPIVEGSLESPPFEKPSIEQGVNNFVHYKFSHLPSKERQTIVELAKMFLNRINYWHLETPSQRRLRSPNDDVAGYKVNYTRWLCYCHVPQFCDSLTRYETTQVFGRTLLRSVF...
                                   	a+esckcngwknpnp pt+pr+d qq+++sl+e+crscshala+hvshlenvseee+nrllg+v+dve+lf++vhkeed+dtkqvyfylfkllrkcilqmgkp vegsl+sppfekp+ieqgv+nfv+ykfshlp+kerqt+vel+kmfl+++nyw+letpsq+r+rs+nddvagykvnytrwlcychvpq+cdsl ryettqvfgrtllrs+f...
                                   	AEESCKCNGWKNPNPPPTPPRADVQQIIVSLTESCRSCSHALAAHVSHLENVSEEEMNRLLGIVLDVEYLFTCVHKEEDADTKQVYFYLFKLLRKCILQMGKPIVEGSLESPPFEKPSIEQGVNNFVHYKFSHLPSKERQTIVELAKMFLNRINYWHLETPSQRRLRSPNDDVAGYKVNYTRWLCYCHVPQFCDSLTRYETTQVFGRTLLRSVF...

Ornithorhynchus anatinus@ENSOANP00000007907	QAEESCKCNGWKNPNPPPTPPRADLQQTIVNLTESCRSCSHALAAHVSHLENESEEEMNRLLGIVLDVEYLFTCVHKEEDADTKQVYFYLFKLLRKCILQMGKPVVEGSLESPPFEKPSIEQGVNNFVQYKFSHLPSKERQTIVELAKMFLNRINYWHLETPSQRRLRSPNDDIAGYKVNYTRWLCYCNVPQFCDSLPRYETTQVF...
                                           	+a+esckcngwknpnp pt+pr+dlqq++++l+e+crscshala+hvshlen seee+nrllg+v+dve+lf++vhkeed+dtkqvyfylfkllrkcilqmgkpvvegsl+sppfekp+ieqgv+nfvqykfshlp+kerqt+vel+kmfl+++nyw+letpsq+r+rs+ndd+agykvnytrwlcyc+vpq+cdslpryettqvf...
                                           	QAEESCKCNGWKNPNPPPTPPRADLQQTIVNLTESCRSCSHALAAHVSHLENESEEEMNRLLGIVLDVEYLFTCVHKEEDADTKQVYFYLFKLLRKCILQMGKPVVEGSLESPPFEKPSIEQGVNNFVQYKFSHLPSKERQTIVELAKMFLNRINYWHLETPSQRRLRSPNDDIAGYKVNYTRWLCYCNVPQFCDSLPRYETTQVF...

Anolis carolinensis@ENSACAP00000000014	KPKLEKGVNNFVQYKFSHLPSKERQTIVELAKMFLNRINYWHLETPSQRRQRSPNDDIAGYKVNYTRWLCYCNVPQFCDSLPRYETTQVFGRTLLRSVFTVMRRQLLEHARQEKDKLPPEKRTLILTHFPKFLSMLEEEVYSQSSPIWDPDFIASSSRNAQLGIQTVISHPPVVRSAACNASPSSLEQSSGGNMSPACKAISGLDQNLGEK...
                                      	kp  e gv+nfvqykfshlp+kerqt+vel+kmfl+++nyw+letpsq+rqrs+ndd+agykvnytrwlcyc+vpq+cdslpryettqvfgrtllrs+ftv+rrqlle++r+ekdklppekrtlilthfpkflsmleee+y+++spiw++df  ++s+++qlgi     +p+vv+++++++sps+leq++gg++spack+ sgl++n gek...
                                      	KPKLEKGVNNFVQYKFSHLPSKERQTIVELAKMFLNRINYWHLETPSQRRQRSPNDDIAGYKVNYTRWLCYCNVPQFCDSLPRYETTQVFGRTLLRSVFTVMRRQLLEHARQEKDKLPPEKRTLILTHFPKFLSMLEEEVYSQSSPIWDPDFIASSSRNAQLGI                 SPSSLEQSSGGNMSPACKAISGLDQNLGEK...

test/GNTPAN12210_hmm_perseqX.ali  view on Meta::CPAN

>Homo sapiens@ENSP00000456712
                                                                                       GGDPARPGLSQQQ**RASQRKAQVRGLPRAKKLEKLGVFSACKANETCKCNGWKNPK*****P*PTAPRMDLQQPAANLSELCRSCEHPLA*DHVSH*LENVSEDEINRLLGMVVDVENLFMSV***HKEEDTDTKQVY*FYLFKLLRKCILQMTRPVVEGSL...
>L oxodonta_africana@ENSLAFP00000006713_that is really long with strange stuff
                                                                                       GGDPARPGLSQQQ**RASQRKAQVRGLPRAKKLEKLGVFSACKANETCKCNGWKNPK*****P*PTAPRMDLQQPAANLSELCRSCEHPLA*DHVSH*LENVSEDEINRLLGMVVDVENLFMSV***HKEEDTDTKQVY*FYLFKLLRKCILQMTRPVVEGSL...
>Canis familiaris@ENSCAFP00000023075
                                                                                       GGDPARPGLSQQQ**RASQRKAQVRGLPRAKKLEKLGVFSACKANETCKCNGWKNPK*****P*PTAPRMDLQQPAANLSELCRSCEHPLA*DHVSH*LENVSEDEINRLLGMVVDVENLFMSV***HKEEDTDTKQVY*FYLFKLLRKCILQMTRPVVEGSL...
>Mus musculus@ENSMUSP00000098017
                                                                                       GGDPARPGLSQQQ**RASQRKAQVRGLPRAKKLEKLGVFSACKANETCKCNGWKNPK*****P*PTAPRMDLQQPAANLSELCRSCEHPLA*DHVSH*LENVSEDEINRLLGMVVDVENLFMSV***HKEEDTDTKQVY*FYLFK******************...
>Monodelphis domestica@ENSMODP00000018493
                                                                                       GGDPARPGLSQQQ**RASQRKAQVRALPRAKKLEKLGVFSACKANDACKCNGWKNPK*****P*PTAPRMDLQQPAANLSEACRSCEHPLA*DHVSH*LENVSEDEINRLLGMVVDVENLFMSV***HKEEDTDTKQVY*FYLFKLLRKCILQMTRPVVEGSL...
>Macropus eugenii@ENSMEUP00000005117
                                                                                      AGGDPARPGLSQQQ**RASQRKAQVRALPRAKKLEKLGVFSACKANDACKCNGWKNPK*****P*PTAPRMDLQQPAANLSEACRSCEHPLA*DHVSH*LENVSEDEINRLLGMVVDVENLFMSV***HKEEDTDTKQVY*FYLFKLLRKCILQMTRPVVEGSL...
>Ornithorhynchus anatinus@ENSOANP00000015773
*********************************************************************************************************************************************************************************A*DHVSH*LENVSEDEISRLLGMVVDVENLFMSV***HKEEDTDPKQVY*FL*********************...
>Xenopus tropicalis@ENSXETP00000004923
                                                                                         DPARPGLSQQQ**RASQRKAQVRALPRAKKLEKLGVFSACKANDLCKCNGWKNPN*****P*QTAPRMDLQQPAASLTEPCRSCGHALA*NHVSH*LENVSEDEINRLLGMVVDVENLFMSV***HKEEDTDTKQVY*FYLFKLLRKCILQMIRPVVEGSL...
>Meleagris gallopavo@ENSMGAP00000006789
**********************************************************************************************************************************************************************************************************************************************************...
>Gallus gallus@ENSGALP00000005317
*********************************************************************************************************************************QANDACKCNGWKNPN*****P*PTAPRMDLQQPVTNLSEPCRSCSHALA*DHVSH*LENVSEEEINRLLGMVVDVENLFMSV***HKEEDTDTKQVY*FYLFKLLRKCILQMSQPVVEGSL...
>Taeniopygia guttata@ENSTGUP00000002617

test/GNTPAN12210_hmm_perseqX.ali  view on Meta::CPAN

>Mus musculus@ENSMUSP00000000724
                                                                                                           KAQLRSAPRAKKLEKLGVYSACKAEESCKCNGWKNPN*****PSPTPPRGDLQQIIVSLTESCRSCSHALA*AHVSH*LENVSEEEMDRLLGIVLDVEYLFTCV***HKEEDADTKQVY*FYLFKLLRKSILQRGKPVVEGSL...
>Canis familiaris@ENSCAFP00000008685
*********************************************************************************************************************************QAEESCKCNGWKNPN*****PSPTPPRADLQQIIVSLTESCRSCSHAL                                                       LLRKSILQRGKPVVEGSL...
>Loxodonta africana@ENSLAFP00000005288
                                                                                                                       LEKLGVYSACKAEESCKCNGWKNPN*****PSPTPPRADLQQIIVSLTESCRSCSHALA*AHVSH*LENVSEEEMNRLLGIVLDVEYLFTCV***HKEEDADTKQVY*FYLFKLLRKSILHRGKPVVEGSL...
>Dasypus novemcinctus@ENSDNOP00000011162
**********************************************************************************************************************************AEESCKCNGWKNPN*****PSPTPPRADLQHIIVSLTESCRSCSHALA*AHVSH*LENVSEEEMNRLLGIVLDVEYLFTCV***HKEEDADTKQVY*FYLFK                  ...
>Monodelphis domestica@ENSMODP00000032522
***********************************************************************************************GASTA**RIAVKKAQLRSAPRAKKLEKLGVYSSCKAEESCKCNGWKNPN*****PPPTPPRADLQQIIVNLTESCRSCSHALA*AHVSH*LENVAEEEMNRLLGIVLDVEYLFTCV***HKEEDADTKQVY*FYLFKLLRKCILQMGKPVVEGSL...
>Macropus eugenii@ENSMEUP00000013271
**********************************************************************************************************************************AEESCKCNGWKNPN*****PPPTPPRADVQQIIVSLTESCRSCSHALA*AHVSH*LENVSEEEMNRLLGIVLDVEYLFTCV***HKEEDADTKQVY*FYLFKLLRKCILQMGKPIVEGSL...
>Ornithorhynchus anatinus@ENSOANP00000007907
*********************************************************************************************************************************QAEESCKCNGWKNPN*****PPPTPPRADLQQTIVNLTESCRSCSHALA*AHVSH*LENESEEEMNRLLGIVLDVEYLFTCV***HKEEDADTKQVY*FYLFKLLRKCILQMGKPVVEGSL...
>Anolis carolinensis@ENSACAP00000000014
**********************************************************************************************************************************************************************************************************************************************************...
>Meleagris gallopavo@ENSMGAP00000011451
**********************************************************************************************************************************************************************************************************************************************************...
>Gallus gallus@ENSGALP00000018380
*********************************************************************************************************************************QAEESCKCNGWKNPN*****PPPTPPRADLQQAVVSLTEPCRSCSHTLA*AHVSH*LENVSEEEMNRLLGIVLDVEYLFTCV***HKEEDADTKQVY*FYLFKLLRKCILQMGKPVIEGSL...
>Meleagris gallopavo@ENSMGAP00000011414

test/GNTPAN12210_hmm_perseqX.log  view on Meta::CPAN

L oxodonta_africana@ENSLAFP00000006713_that is really long with strange stuff
	12-87
Canis familiaris@ENSCAFP00000023075
	1-87
Mus musculus@ENSMUSP00000098017
	1-87
	499-529
Monodelphis domestica@ENSMODP00000018493
	64-87
	621-692
Macropus eugenii@ENSMEUP00000005117
	1-86
	647-692
Ornithorhynchus anatinus@ENSOANP00000015773
	334-349
	460-528
Xenopus tropicalis@ENSXETP00000004923
	1-89
Meleagris gallopavo@ENSMGAP00000006789
	451-528
Gallus gallus@ENSGALP00000005317

test/GNTPAN12210_hmm_perseqX.log  view on Meta::CPAN

	412-433
Loxodonta africana@ENSLAFP00000005288
	107-119
Dasypus novemcinctus@ENSDNOP00000011162
	233-265
	326-390
	412-451
	587-646
	856-892
Monodelphis domestica@ENSMODP00000032522
Macropus eugenii@ENSMEUP00000013271
	390-433
	577-646
	710-934
Ornithorhynchus anatinus@ENSOANP00000007907
	425-446
Anolis carolinensis@ENSACAP00000000014
	425-446
Meleagris gallopavo@ENSMGAP00000011451
Gallus gallus@ENSGALP00000018380
Meleagris gallopavo@ENSMGAP00000011414

test/GNTPAN12210_hmm_perseqX.score  view on Meta::CPAN

                                   	                                                                        GGDPARPGLSQQQRASQRKAQVRGLPRAKKLEKLGVFSACKANETCKCNGWKNPKPPTAPRMDLQQPAANLSELCRSCEHPLADHVSHLENVSEDEINRLLGMVVDVENLFMSVHKEEDTDTKQVYFYLFKLLRKCILQMTR...

Mus musculus@ENSMUSP00000098017	MAEPSQAPNPVPAAQPRPLHSPAPAPTSTPAPSPASASTPAPTPAPAPAPAAAPAGSTGSGGAGVGSGGDPARPGLSQQQRASQRKAQVRGLPRAKKLEKLGVFSACKANETCKCNGWKNPKPPTAPRMDLQQPAANLSELCRSCEHPLADHVSHLENVSEDEINRLLGMVVDVENLFMSVHKEEDTDTKQVYFYLFKGVLNFVQYKFSHLAPRERQT...
                               	                                                              +   +ggdparpglsqqqrasqrkaqvr+lprakkleklgvfsackane+ckcngwknp+pptaprmdlqqpa++lse crsc+h+ladhvshlenvse+einrllgmvvdvenlfmsvhkeedtdtkqvyfylfkgvlnfvqykfshl+p+erqt...
                               	                                                                   GGDPARPGLSQQQRASQRKAQVRGLPRAKKLEKLGVFSACKANETCKCNGWKNPKPPTAPRMDLQQPAANLSELCRSCEHPLADHVSHLENVSEDEINRLLGMVVDVENLFMSVHKEEDTDTKQVYFYLFKGVLNFVQYKFSHLAPRERQT...

Monodelphis domestica@ENSMODP00000018493	GAPGSGTPGVGSGAPGAGGDPARPGLSQQQRASQRKAQVRALPRAKKLEKLGVFSACKANDACKCNGWKNPKPPTAPRMDLQQPAANLSEACRSCEHPLADHVSHLENVSEDEINRLLGMVVDVENLFMSVHKEEDTDTKQVYFYLFKLLRKCILQMTRPVVEGSLGSPPFEKPNIEQGVLNFVQFKFSHLAPRERQTMFELSKMFLLC...
                                        	                +ggdparpglsqqqrasqrkaqvr++prakkleklgvfsackan++ckcngwknp+ppt+prmdlqqpa++lse crsc+h+ladhvshlenvse+einrllgmvvdvenlfmsvhkeedtdtkqvyfylfkllrkcilqm++pvvegslgsppfekpnieqgvlnfvq+kfshl+p+erqtm+elskmfllc...
                                        	                 GGDPARPGLSQQQRASQRKAQVRALPRAKKLEKLGVFSACKANDACKCNGWKNPKPPTAPRMDLQQPAANLSEACRSCEHPLADHVSHLENVSEDEINRLLGMVVDVENLFMSVHKEEDTDTKQVYFYLFKLLRKCILQMTRPVVEGSLGSPPFEKPNIEQGVLNFVQFKFSHLAPRERQTMFELSKMFLLC...

Macropus eugenii@ENSMEUP00000005117	MAEPPQAQAQVPTQTQAQAQAPVPEPAPAPAPAPAPVPAPTPPGPAAAPAGAPGSGTPGAGSAAPGAGGDPARPGLSQQQRASQRKAQVRALPRAKKLEKLGVFSACKANDACKCNGWKNPKPPTAPRMDLQQPAANLSEACRSCEHPLADHVSHLENVSEDEINRLLGMVVDVENLFMSVHKEEDTDTKQVYFYLFKLLRKCILQMTRPVVEG...
                                   	                                                            +     aggdparpglsqqqrasqrkaqvralprakkleklgvfsackan++ckcngwknp+pptaprmdlqqpa++lse crsc+h+ladhvshlenvse+einrllgmvvdvenlfmsvhkeedtdtkqvyfylfkllrkcilqm++pvveg...
                                   	                                                                  AGGDPARPGLSQQQRASQRKAQVRALPRAKKLEKLGVFSACKANDACKCNGWKNPKPPTAPRMDLQQPAANLSEACRSCEHPLADHVSHLENVSEDEINRLLGMVVDVENLFMSVHKEEDTDTKQVYFYLFKLLRKCILQMTRPVVEG...

Ornithorhynchus anatinus@ENSOANP00000015773	ADHVSHLENVSEDEISRLLGMVVDVENLFMSVHKEEDTDPKQVYFLPVHGGVLNFVQYKFSHLAPKERQTMYELSKMFLLCLNYWKLETPAQFRQRSQAEDVAAYKVNYTRAQRGRGRPRGPGPRSGGRGLLKSIFTVTRRQLLEKFRVEKDKLVPEKRTLILTHFPKFLSMLEEEIYGENSPIWAAGFTLPAAEGTQLGPQPAAV...
                                           	adhvshlenvse+ei rllgmvvdvenlfmsvhkeedtd kqvyf pv+ gvlnfvqykfshl+pkerqtm+elskmfllc+nywkletp+qfrqrsq +dva+ykvnytr       pr       gr ll+siftvtrrqllekfrvekdkl+pekrtlilthfpkflsmleeeiygenspiw ++ft pa+egtqlg++p+ v...
                                           	ADHVSHLENVSEDEISRLLGMVVDVENLFMSVHKEEDTDPKQVYFLPVHGGVLNFVQYKFSHLAPKERQTMYELSKMFLLCLNYWKLETPAQFRQRSQAEDVAAYKVNYTR                GRGLLKSIFTVTRRQLLEKFRVEKDKLVPEKRTLILTHFPKFLSMLEEEIYGENSPIWAAGFTLPAAEGTQLGPQPAAV...

Xenopus tropicalis@ENSXETP00000004923	LIEAPEGLSPAEEGRNVPIQLTGSPAITQATEGSSEGIKEPETPNPNPRASPSGLEAPAAGHTATGTGGGSSSSTSDPARPGLSQQQRASQRKAQVRALPRAKKLEKLGVFSACKANDLCKCNGWKNPNPQTAPRMDLQQPAASLTEPCRSCGHALANHVSHLENVSEDEINRLLGMVVDVENLFMSVHKEEDTDTKQVYFYLFKLLRKCIL...
                                     	                                                                         + +dparpglsqqqrasqrkaqvralprakkleklgvfsackan+ ckcngwknpnp taprmdlqqpa+sl+epcrsc+hala+hvshlenvse+einrllgmvvdvenlfmsvhkeedtdtkqvyfylfkllrkcil...
                                     	                                                                            DPARPGLSQQQRASQRKAQVRALPRAKKLEKLGVFSACKANDLCKCNGWKNPNPQTAPRMDLQQPAASLTEPCRSCGHALANHVSHLENVSEDEINRLLGMVVDVENLFMSVHKEEDTDTKQVYFYLFKLLRKCIL...

test/GNTPAN12210_hmm_perseqX.score  view on Meta::CPAN

                                     	             LEKLGVYSACKAEESCKCNGWKNPNPSPTPPRADLQQIIVSLTESCRSCSHALAAHVSHLENVSEEEMNRLLGIVLDVEYLFTCVHKEEDADTKQVYFYLFKLLRKSILHRGKPVVEGSLEKKPPFEKPSIEQGVNNFVQYKFSHLPSKERQTIVELAKMFLNRINYWHLEAPSQRRLRSPNDDISGYKENYTRWLCYC...

Dasypus novemcinctus@ENSDNOP00000011162	AEESCKCNGWKNPNPSPTPPRADLQHIIVSLTESCRSCSHALAAHVSHLENVSEEEMNRLLGIVLDVEYLFTCVHKEEDADTKQVYFYLFKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVNNFVQYKFSHLPSKERQTIVELAKMFLNRINYWHLEAPSQRRLHSPNDDISGYKENYTXXXXXXXXXXXXXXXXXXXXXXXXXXXX...
                                       	a+esckcngwknpnp pt+pr+dlq++++sl+e+crscshala+hvshlenvseee+nrllg+v+dve+lf++vhkeed+dtkqvyfylfk                               gv+nfvqykfshlp+kerqt+vel+kmfl+++nyw+le psq+r++s+ndd++gyk+nyt                            ...
                                       	AEESCKCNGWKNPNPSPTPPRADLQHIIVSLTESCRSCSHALAAHVSHLENVSEEEMNRLLGIVLDVEYLFTCVHKEEDADTKQVYFYLFK                               GVNNFVQYKFSHLPSKERQTIVELAKMFLNRINYWHLEAPSQRRLHSPNDDISGYKENYT                            ...

Monodelphis domestica@ENSMODP00000032522	GASTARIAVKKAQLRSAPRAKKLEKLGVYSSCKAEESCKCNGWKNPNPPPTPPRADLQQIIVNLTESCRSCSHALAAHVSHLENVAEEEMNRLLGIVLDVEYLFTCVHKEEDADTKQVYFYLFKLLRKCILQMGKPVVEGSLESPPFEKPSIEQGVNNFVQYKFSHLPSKERQTIVELAKMFLNRINYWHLETPSQRRQRSPNDDVAGY...
                                        	    +r++++kaq+r++prakkleklgv+s+cka+esckcngwknpnp pt+pr+dlqq++++l+e+crscshala+hvshlenv eee+nrllg+v+dve+lf++vhkeed+dtkqvyfylfkllrkcilqmgkpvvegsl+sppfekp+ieqgv+nfvqykfshlp+kerqt+vel+kmfl+++nyw+letpsq+rqrs+nddvagy...
                                        	GASTARIAVKKAQLRSAPRAKKLEKLGVYSSCKAEESCKCNGWKNPNPPPTPPRADLQQIIVNLTESCRSCSHALAAHVSHLENVAEEEMNRLLGIVLDVEYLFTCVHKEEDADTKQVYFYLFKLLRKCILQMGKPVVEGSLESPPFEKPSIEQGVNNFVQYKFSHLPSKERQTIVELAKMFLNRINYWHLETPSQRRQRSPNDDVAGY...

Macropus eugenii@ENSMEUP00000013271	AEESCKCNGWKNPNPPPTPPRADVQQIIVSLTESCRSCSHALAAHVSHLENVSEEEMNRLLGIVLDVEYLFTCVHKEEDADTKQVYFYLFKLLRKCILQMGKPIVEGSLESPPFEKPSIEQGVNNFVHYKFSHLPSKERQTIVELAKMFLNRINYWHLETPSQRRLRSPNDDVAGYKVNYTRWLCYCHVPQFCDSLTRYETTQVFGRTLLRSVF...
                                   	a+esckcngwknpnp pt+pr+d qq+++sl+e+crscshala+hvshlenvseee+nrllg+v+dve+lf++vhkeed+dtkqvyfylfkllrkcilqmgkp vegsl+sppfekp+ieqgv+nfv+ykfshlp+kerqt+vel+kmfl+++nyw+letpsq+r+rs+nddvagykvnytrwlcychvpq+cdsl ryettqvfgr+llrs+f...
                                   	AEESCKCNGWKNPNPPPTPPRADVQQIIVSLTESCRSCSHALAAHVSHLENVSEEEMNRLLGIVLDVEYLFTCVHKEEDADTKQVYFYLFKLLRKCILQMGKPIVEGSLESPPFEKPSIEQGVNNFVHYKFSHLPSKERQTIVELAKMFLNRINYWHLETPSQRRLRSPNDDVAGYKVNYTRWLCYCHVPQFCDSLTRYETTQVFGRTLLRSVF...

Ornithorhynchus anatinus@ENSOANP00000007907	QAEESCKCNGWKNPNPPPTPPRADLQQTIVNLTESCRSCSHALAAHVSHLENESEEEMNRLLGIVLDVEYLFTCVHKEEDADTKQVYFYLFKLLRKCILQMGKPVVEGSLESPPFEKPSIEQGVNNFVQYKFSHLPSKERQTIVELAKMFLNRINYWHLETPSQRRLRSPNDDIAGYKVNYTRWLCYCNVPQFCDSLPRYETTQVF...
                                           	+a+esckcngwknpnp pt+pr+dlqq++++l+e+crscshala+hvshlen seee+nrllg+v+dve+lf++vhkeed+dtkqvyfylfkllrkcilqmgkpvvegsl+sppfekp+ieqgv+nfvqykfshlp+kerqt+vel+kmfl+++nyw+letpsq+r+rs+ndd+agykvnytrwlcyc+vpq+cdslpryettqvf...
                                           	QAEESCKCNGWKNPNPPPTPPRADLQQTIVNLTESCRSCSHALAAHVSHLENESEEEMNRLLGIVLDVEYLFTCVHKEEDADTKQVYFYLFKLLRKCILQMGKPVVEGSLESPPFEKPSIEQGVNNFVQYKFSHLPSKERQTIVELAKMFLNRINYWHLETPSQRRLRSPNDDIAGYKVNYTRWLCYCNVPQFCDSLPRYETTQVF...

Anolis carolinensis@ENSACAP00000000014	KPKLEKGVNNFVQYKFSHLPSKERQTIVELAKMFLNRINYWHLETPSQRRQRSPNDDIAGYKVNYTRWLCYCNVPQFCDSLPRYETTQVFGRTLLRSVFTVMRRQLLEHARQEKDKLPPEKRTLILTHFPKFLSMLEEEVYSQSSPIWDPDFIASSSRNAQLGIQTVISHPPVVRSAACNASPSSLEQSSGGNMSPACKAISGLDQNLGEK...
                                      	kp  e gv+nfvqykfshlp+kerqt+vel+kmfl+++nyw+letpsq+rqrs+ndd+agykvnytrwlcyc+vpq+cdslpryettqvfgr+llrs+ftv+rrqlle++r+ekdklppekrtlilthfpkflsmleee+y++ spiw+ df  ++s+++qlgi     +p+vv+++++++sps++eq++gg++spa+k  sgl+ n gek...
                                      	KPKLEKGVNNFVQYKFSHLPSKERQTIVELAKMFLNRINYWHLETPSQRRQRSPNDDIAGYKVNYTRWLCYCNVPQFCDSLPRYETTQVFGRTLLRSVFTVMRRQLLEHARQEKDKLPPEKRTLILTHFPKFLSMLEEEVYSQSSPIWDPDFIASSSRNAQLGI                 SPSSLEQSSGGNMSPACKAISGLDQNLGEK...