BioPerl-Run

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t/data/hmmpfam_protein_input  view on Meta::CPAN

>protein_input
KSHTGARLFICETCGKAFNTNSILKVHIRCHTGERPYLCKTCGKAFKQSSALSYHIRVHTGERPDVCKTCGKSFQRSEELKFHVRDHTGERPYVCKICGKAFKRNKELKTHFRVHTGERPYLCKTCGKAFKQNSQLYVHMRIHKDERPCLCKTCGKAFKRNEELKTHLRVHTGERPYLCKTCGKTFKQKSALNVHMRVHTDERPYVCETCGETFSQNCELVQH

t/data/test-spa-p.fas  view on Meta::CPAN

CTSTKS*QQIQQRTTKCFL*NFTFT*LN*RTT*RLHPKP*RRSFSEQRNFSRS*KAKRCS
STKRGRQQQAWQRRQQQAW*RRRQQTW*RRQQKTWQRRWQQTW*RRRQQAW*RRWQQAW*
RRRQRSTCR*TW*YSK*HCKSKRHYC*QNCCR*QIS**KHNQTWSRTCC**EATSKPCRC
*QSSSITRNW*RKSIHRYNCIWWIIISVRCS
>gi|9501792|dbj|AB035454.1| Staphylococcus aureus hlgA, orfX, spa genes, partial and complete cds
KLIHG*SEVFTVLRLKIQSFWVWLF*LLCRCYFLLYQK*KYLYLMTL*RLA*AYMYNV*N
*SN*SLLLYSYLWQSV**VTLGLSV*SHHISRKQSFAEVMLKSY*CQQ*LVPYQLLLQT*
LGVPYSCLKKCQQVYLLLLLVPHSSYTYY*P*KSYNDIIKTK*PHNEVS*MIQLTNSCEV
FLYI*LLLLLTSVDFLNYILILYIQITPTHIL*YQSIFFDFSNIDNYFLFKYSV**CHLF
KNTNFNKNIILFLIVNYGLFFLLYCVILK*SAYTRR*NNEI**P*QN*RFYNH*SIYVSF
*EKSQA*SRYDYKRIYITDLFISSARKHTSI*EDCFRFML*TIGFSTAYKSTCETFIY**
SSK*N**A*YLHFNI*RTTRENCRTCYIV*SNH*TI*PCRSK*ITDDTKR**RISKLDDV
YNVFQEYYQKTSNIKFCRIHNSSYYHFSK*KHRSS*RFN*NNPP*IPSNC*SSQ*FKKAR
LSNKRTLN*R*KKNFNSYG*RAARPC*TIISSSESIISR*RSFTSCF*IISLLRKCAVF*
SALVFSIF**NLST**TTFYFLYHLKPFPKLNLSTFKAPLYS*KYFLTHMY*TAFIIKNI
SIFYLFLLIEIA*FCGFKPFTS*INLSAKYLFYKL*NLHLNLIINIDFSIAIHNSLYYDD
FTNTYRGY*FEKEKHLFNS*TRCRYCICNFRYITYMWWRNTCCKCCATR*SSTKCFLSSV
KYA*LKR*ST*WFYPKP*R*SKPKC*RFR*SSKT**LSSSKS*CATK*LQQRSTKRLL*N
LEHA*LKRSAT*RLHSKS*RRPKPKH*CFR*S*KIKRISSTES**QFQQRTTKCFL*NLE
YA*LKRRTTQCFIQS
>gi|133853457|gb|EF455822.1| Staphylococcus aureus subsp. aureus immunoglobulin G binding protein A precursor, gene, complete cds

t/data/tree_of_life  view on Meta::CPAN

                (
                 (
                  (
                   (
                    (
                     COTTONRAT,
		     (RAT,RATTUS*)
                    ),
                    (MOUSE,MUS_MUSCULUS)
                   ),
                   (MESOCRICETUS*,HAMSTER,CRICETULUS*)
                  ),
                  (
                   GLAUCOMYS*,
                   MARMOT
                  )
                 ),
                 //Hystricognathi
		 (
                  (PORCUPINE,HYSTRIX*),
                  (CAVIA*,GUINEAPIG)

t/data/tree_of_life  view on Meta::CPAN

                (
                 (RHINOCEROS,DICEROS*),
                 (
                  (
                   HORSE,
                   EQUUS_ASINUS,
                   EQUUS_CABALLUS
                  )
                 )
                ),
                //ARTIODACTYL+CETACEA
                (
                 CAMELUS*,
                 LAMA*,
                 (
		  (PIG,SUS*),
                  (
                   //RUMINANTIA 
	  	   (
                    (
                     (

t/data/tree_of_life  view on Meta::CPAN

                    ),
		    (
                     (
                      (OVIS*,SHEEP),
                      (GOAT,CAPRA*)
                     ),
                     DEER,
                     GAZELLA*
                    )
                   ), // END OF RUMINATIA
                   // HIPPO + CETACEA
	           (
                    HIPPOPOTAMUS*,   
                    //CETACEA
                    (
                     (DOLPHIN, TURSIOPS),
                     (
		      (SPERMWHALE,PHYSETER*),
                      (BLUEWHALE,MEGAPTERA*)
                     )
                    ) // END OF CETACEA
                   ) // END OF HIPPO+CETACEA
                  ) // END OF HIPPO+CETACEA+RUMINANTIA
                 ) // END OF HIPPO+CETACEA+RUMINANTIA+PIG
                ) // END OF CETARTIODACTYLA
               ) // END OF CETARTIODACTYLA+PERISSODACTYLA
              ) // END OF DACTYLA+CARNIVORA
             ) // END OF groupIV
            ) // END OF groupIII_groupIV
           ) // END OF EUTHERIA
          ) // END OF MAMMALS
         ) // END OF AMNIOTA
        ) // END OF TETRAPODA
       ) // END OF GNATHOSTOMA
      ) // END OF VERTEBRATES
      ) // END OF DEUTEROSTOMA