Bio-BPWrapper

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test-files/test-bioseq.gb  view on Meta::CPAN

                     /gene="tsf"
                     /locus_tag="BB_0122"
                     /note="identified by match to protein family HMM PF00627;
                     match to protein family HMM PF00889; match to protein
                     family HMM TIGR00116"
                     /codon_start=1
                     /transl_table=11
                     /product="translation elongation factor Ts"
                     /protein_id="AAC66512.1"
                     /translation="MSIISPQDVKKLREETNAGFGDCKKALSVAGGDFELAKKKLREM
                     GIASAEKRLDRDAKEGRVFSYSNNIYAGLLLVSCETDFVALNHNFVNFGNSLIKELVE
                     SGIDSLTTSQELELKNLAATIKENIQVKKIFITKIQSNEFVKIYLHGEQSKIGVLVKL
                     KVNDFSKTEDKIFKNFAMDLALHVAAFAPVYLRNDDVCPNYIKEQEEIFTKQLESSGK
                     PESIIKGIVAGKIKKHLAEISLLEQSFVKNDKITVKEMLEEISKAISSKVEMVEFKYL
                     RIG"
     gene            complement(119807..120589)
                     /gene="rpsB"
                     /locus_tag="BB_0123"
     CDS             complement(119807..120589)
                     /gene="rpsB"
                     /locus_tag="BB_0123"

test-files/test-bioseq.gb  view on Meta::CPAN

                     /product="conserved hypothetical protein"
                     /protein_id="AAC66681.1"
                     /translation="MDDRAINFSELCDKMRSYLERESHVDLMEIEADTLEEALNDASL
                     ELSVPYKELDYEILLKGSNGILGYGKKKWKIVAYRNSSSKPKVSLDSKNDSGEKEVIS
                     SDGEFFIRKSSKGVFLKVISPKGQGIPIKYQDVIFKLELHSNIENFNKDIVKGIVENA
                     SGYYEKIADFESDPSENVTMMVQISENSMSVTIEFTAPGINGAEIFAQDIFNILRKYG
                     VIDIAILKDKVAKFVDYPVYGEPVELARGLEPVKGKDSYIDFIVDENNRFGEYEVSSI
                     GFRNVIEGEELARIIPFGKGVDGYTVFGKVLKSESGQDIDFILGENTFRDGYKIRAKC
                     NGYMSVSDGVISVHNIYLVKGDVGPATGDIVNNGMVLVQGNVLDGYNIMAKSGIEVKG
                     LVGRCNLKTDGSIIFHSGVNGKGDSKIYARGNVRAKFLENVTLNCGGEVEVLRGIVNS
                     SVSSKKRVLCIGKKSKIVGSNVCAKEEVRAYSIGSDRSCETCIDVGYDPEIKDLLTRF
                     TSHLEKIEKRLEVLTKDIVALKKNIVLITDKAEKSLKIDSYNEFVNESKILRMEIKMI
                     EAKRINLQNELENTKIEGKVSVENIACSGVKLYIKNAFYELSKDYNNVTFIEDDNYIK
                     VMTYIPFKSR"
     gene            complement(281314..281793)
                     /locus_tag="BB_0268"
     CDS             complement(281314..281793)
                     /locus_tag="BB_0268"
                     /codon_start=1
                     /transl_table=11
                     /product="conserved hypothetical protein"

test-files/test-bioseq.gb  view on Meta::CPAN

                     /gene="dnaN"
                     /locus_tag="BB_0438"
                     /EC_number="2.7.7.7"
                     /note="identified by match to protein family HMM PF00712;
                     match to protein family HMM PF02767; match to protein
                     family HMM PF02768; match to protein family HMM TIGR00663"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III, beta subunit"
                     /protein_id="AAB91514.1"
                     /translation="MLHNTFFICETNQIMNEIEKAKGIILNRNMNDIWSALLIEVKKS
                     NLIIKSTDRNIFFESTISIVSETDFKVLINASNFYDAVKAFSFYKKIKIVFNENNSKL
                     EIMGELNDEKEEYEDHLKEPTFSYEEIENYNYDMVNEDYTFGIEIKQKSFKKVINRIA
                     FSAHLDESKNVLNGVYFSKDEDSKLLLVSTNGHRMSICKTEVIVEEDVNFIVPVKIFN
                     FLKHLMSGEGMVKIKFSDKKFYVEFDNYKIACSLINGNYPDYKSIIPKEQKNKSLVSL
                     GILKDRLARVNLYVDKSRKLVLTFSELQLKLLGEDLITGRKGEFFIKDPNYLYDGADE
                     VMAINISYFVEAISVFETSKIEIQFNSGNVLKLSEPENFNFTHLIMPMSLG"
     gene            459525..459824
                     /locus_tag="BB_0439"
     CDS             459525..459824
                     /locus_tag="BB_0439"

test-files/test-bioseq.gb  view on Meta::CPAN

     gene            42267..42473
                     /gene="lp6.6"
                     /locus_tag="BB_A62"
     CDS             42267..42473
                     /gene="lp6.6"
                     /locus_tag="BB_A62"
                     /codon_start=1
                     /transl_table=11
                     /product="6.6 kDa lipoprotein (Lp6.6 protein)"
                     /protein_id="AAC66241.1"
                     /translation="MTKLMYAIFLSAILFVACETTRISDEMENTSDEDSKVTAPMTDK
                     DMMKSMPDKNTKSMKQPMTKSMKK"
     gene            complement(42624..43532)
                     /locus_tag="BB_A64"
     CDS             complement(42624..43532)
                     /locus_tag="BB_A64"
                     /codon_start=1
                     /transl_table=11
                     /product="P35 antigen"
                     /protein_id="AAC66255.1"
                     /translation="MKNNKLIAIFLLHVLTVLILISCSLEVKDSNESKKHKKEKRKGK