BioPerl

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deobfuscator/Deobfuscator/bin/deob_index.pl  view on Meta::CPAN

=head1 DEPENDENCIES

L<version>, L<File::Find>, L<DB_File>


=head1 INCOMPATIBILITIES

None reported.


=head1 BUGS AND LIMITATIONS

No bugs have been reported.

deob_index.pl currently expects the sections of POD in a BioPerl module to
be in a particular order, namely: NAME, SYNOPSIS, DESCRIPTION, CONSTRUCTORS,
... , APPENDIX. Those sections are expected to be marked with =head1 POD tags,
and the documentation for each method is expected to be in =head2 sections
in the APPENDIX. The order of SYNOPSIS and DESCRIPTION can be flipped, but
this behavior should not be taken as encouragement to do so.

deobfuscator/Deobfuscator/cgi-bin/deob_detail.cgi  view on Meta::CPAN

=head1 DEPENDENCIES

L<version>, L<CGI>, L<Deobfuscator>


=head1 INCOMPATIBILITIES

None reported.


=head1 BUGS AND LIMITATIONS

No bugs have been reported.


=head1 FEEDBACK

=head2 Mailing Lists

User feedback is an integral part of the evolution of this and other
Bioperl modules. Send your comments and suggestions preferably to one

deobfuscator/Deobfuscator/cgi-bin/deob_interface.cgi  view on Meta::CPAN

=head1 DEPENDENCIES

L<version>, L<CGI>, L<Deobfuscator>


=head1 INCOMPATIBILITIES

None reported.


=head1 BUGS AND LIMITATIONS

=over

=item C<< Selecting a class name returns no methods >>

Clicking on C<< Bio::Tools::dpAlign >> or C<< Bio::Tools::AlignFactory >> in
the upper class selection pane produces an empty lower methods pane. There are
undoubtedly other modules that will display this behavior. Reported by Laura
Kavanaugh 2006-04-18.

deobfuscator/Deobfuscator/lib/Deobfuscator.pm  view on Meta::CPAN

=head1 DEPENDENCIES

L<version>, L<Class::Inspector>, L<DB_File>


=head1 INCOMPATIBILITIES

None reported.


=head1 BUGS AND LIMITATIONS

In the current implementation, Deobfuscator does not show internal or private
methods (i.e. those whose name begins with an underscore). This is simply an
option in the Class::Inspector->methods call, and so could be presented as an
option to the user (patches welcome).

No bugs have been reported.


=head1 FEEDBACK